单价金属离子结合促进了spliceosome中的第一个转化反应
Jana Aupič1, Jure Borišek2, Sebastian M Fica3
1National Research Council of Italy (CNR)-Materials Foundry (IOM) c/o International School for Advanced Studies (SISSA), Trieste, Italy.
Nature communications
|December 20, 2023
概括
离子 (K+) 在前信使RNA (前mRNA) 拼接中发挥着至关重要的作用,通过稳定拼接体活性部位. 这种稳定性调节了拼接过程的动力学和热力学,揭示了直接的催化功能.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- 核酸加工依赖于复杂的蛋白质-RNA机制.
- 一个保存的第二单价离子,通常是 (K+),存在于活性位点,但其功能尚不清楚.
- 最近发现,对于真核细胞前mRNA拼接至关重要的spliceosome在其活性部位中含有离子.
研究的目的:
- 阐明单价离子 (K+) 在结合体的催化活性中的作用.
- 研究K+在第一个拼接步骤的动力学和热力学中的作用.
主要方法:
- 有偏差的量子力学/分子力学 (QM/MM) 分子动力学模拟.
- 高分辨率的结构分析spliceosome活动部位.
主要成果:
- +离子使结合体的活性部位刚化,提高了催化效率.
- 通过键形成,K+稳定了基质在催化前和催化后的状态.
- 离子直接影响第一个催化步骤的动力学和热力学.
结论:
- 离子 (K+) 在结合酶体催化过程中具有直接且至关重要的作用.
- 这一发现为其他核酸加工酶中的单价离子功能提供了机械学假设.
- 这项研究强调了第二层子在酶活性中的重要性.
相关概念视频
RNA Splicing
56.4K
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
56.4K
Pre-mRNA Processing: RNA Splicing
5.2K
5.2K
Alternative RNA Splicing
21.2K
Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
21.2K
Pre-mRNA Processing: Modification of pre-mRNA Ends
9.3K
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps...
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps...
9.3K
Chromatin Structure Regulates pre-mRNA Processing
7.0K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
7.0K
Ribosomal RNA Synthesis
13.2K
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
13.2K


