相关实验视频
Updated: Jul 7, 2025

10:25
Using the E1A Minigene Tool to Study mRNA Splicing Changes
Published on: April 22, 2021
4.9K
拼接Lore:一个网络资源,用于研究人体拼接因子对磁带外子的调节
Hélène Polvèche, Jessica Valat1,2, Nicolas Fontrodona1,2
1Laboratoire de Biologie et Modelisation de la Cellule, Ecole Normale Superieure de Lyon, CNRS, UMR 5239, Inserm, U1293, Universite Claude Bernard Lyon 1, 46 allee d'Italie, Lyon F-69364, France.
Database : the journal of biological databases and curation
|December 21, 2023
概括
科学家现在可以用新的数据库SplicingLore解码拼接因子效应. 它有助于预测全基因组的替代拼接结果,并通过实验验证SF合作.
科学领域:
- 分子生物学分子生物学
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
背景情况:
- 了解拼接因子 (SF) 的复杂相互作用对于预测替代RNA拼接结果至关重要.
- 现有的资源往往缺乏用于SF函数的全基因组相关性分析的标准化数据.
研究的目的:
- 引入SplicingLore,一个开放的数据库和网络资源,以解决解码SF合作或对抗效应的挑战.
- 提供一个用户友好的平台来检索SF特定的外子数据,并识别控制外子包含的SF.
主要方法:
- 编制了由75个SFs调节的替代外型的RNA测序数据.
- 标准化数据处理以进行有效的比较和相关性分析.
- 开发了一种工作流程,用于计算数据集之间的相关性得分,并识别SF控制.
主要成果:
- 现在可以使用SplicingLore数据库,包含75个SFs的标准化RNA-seq数据.
- 成功预测并通过实验验证了DDX17,DDX5和HNRNPC之间的新合作.
- 证明了一种可靠的方法来计算SF数据集之间的相关性得分.
结论:
- 拼接Lore促进了对替代RNA拼接的SF效应的解码.
- 该资源可以预测拼接结果,并识别监管SFs.
- 实验验证证证实了SplicingLore在发现功能性SF合作中的实用性.
相关概念视频
Alternative RNA Splicing
21.2K
Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
21.2K
RNA Splicing
56.4K
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
56.4K
Chromatin Structure Regulates pre-mRNA Processing
7.0K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
7.0K
Exon Recombination
3.6K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
3.6K
What is Gene Expression?
8.5K
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is comprised of nucleotides and proteins are comprised of amino acids, a mediator is required to convert the information encoded in DNA into proteins. This mediator is the messenger RNA (mRNA). mRNA copies the blueprint from DNA by a process called transcription. In eukaryotes, transcription occurs in the nucleus by complementary base-pairing with the DNA template. The mRNA is then...
8.5K
Pre-mRNA Processing: RNA Splicing
5.2K
5.2K

