NeuroPep 2.0:一个更新的数据库,专门用于神经及其受体注释
Mingxia Wang1, Lei Wang2, Wei Xu1
1Institute of Medical Artificial Intelligence, Binzhou Medical University, Yantai, Shandong 264003, China.
Journal of molecular biology
|December 24, 2023
概括
NeuroPep 2.0是一个更新的数据库,包含超过11000个神经条目,包括预测的结构和新的识别工具. 此资源有助于研究神经的潜在治疗应用.
科学领域:
- 神经科学是一个神经科学.
- 生物化学 生物化学
- 计算生物学 计算生物学
背景情况:
- 神经调节神经系统外围和神经系统内的各种生理过程.
- 它们的多面性作用表明它们对各种疾病具有治疗潜力.
- NeuroPep数据库是神经研究的一个重要资源.
研究的目的:
- 将NeuroPep数据库更新和扩展到2.0.0版本.
- 整合用于神经标识和结构预测的新工具.
- 为神经研究提供一个全面的,可访问的资源.
主要方法:
- 扩展了数据库,包括11,417个神经条目.
- 收集了用于神经条目的受体信息.
- 使用AlphaFold2或APPTEST预测未知结构的3D结构.
- 集成的DeepNeuropePred和NeuroPred-PLM工具用于神经的识别.
主要成果:
- 现在NeuroPep 2.0包含的条目几乎是之前版本的两倍.
- 对于缺乏实验数据的神经,预测了3D结构.
- 新的预测工具促进了新型神经的发现.
- 该数据库可以在网上免费访问.
结论:
- NeuroPep 2.0代表了神经数据库的重大进展.
- 集成的工具增强了神经的识别和表征.
- 此更新的资源支持对神经功能和治疗开发的研究.
更多相关视频
08:32Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo
Published on: May 4, 2018
6.4K
11:49Characterization of G Protein-coupled Receptors by a Fluorescence-based Calcium Mobilization Assay
Published on: July 28, 2014
40.2K
相关概念视频
Protein Networks
4.0K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
4.0K
G Protein-coupled Receptors
12.1K
G Protein-Coupled Receptors or GPCRs are membrane-bound receptors that transiently associate with heterotrimeric G proteins and induce an appropriate response to sensory stimuli such as light, odors, hormones, cytokines, or neurotransmitters.
GPCRs are also called heptahelical, 7TM, or serpentine receptors, and consist of seven (H1-H7) transmembrane alpha-helices that span the bilayer to form a cylindrical core. The transmembrane helices are connected by three extracellular loops and three...
GPCRs are also called heptahelical, 7TM, or serpentine receptors, and consist of seven (H1-H7) transmembrane alpha-helices that span the bilayer to form a cylindrical core. The transmembrane helices are connected by three extracellular loops and three...
12.1K
Classification of Neurotransmitters
2.9K
Neurotransmitters play a crucial role in the communication between neurons in the autonomic nervous system. Neurons in the autonomic nervous system can be cholinergic or adrenergic depending on the neurotransmitters synthesized. Cholinergic neurons use acetylcholine as their primary neurotransmitter. This includes all the preganglionic fibers of the sympathetic and pre- and postganglionic fibers of the parasympathetic nervous systems. In addition, neurons of the somatic nervous system also use...
2.9K
Transducer Mechanism: Enzyme-Linked Receptors
2.5K
Enzyme-linked receptors are cell-surface receptors acting as an enzyme or associating with an enzyme intracellularly. They make excellent drug targets. Drugs can bind to the extracellular ligand-binding domain or directly affect their enzymatic domain and alter their activity.
Major types that are helpful drug targets include:
Major types that are helpful drug targets include:
2.5K
