在急性SARS-CoV-2感染期间,宿主内部的进化动态和组织细分
Mireille Farjo1, Katia Koelle2, Michael A Martin2,3
1Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Journal of virology
|January 4, 2024
概括
每日采样揭示了宿主体内的SARS-CoV-2进化. 病毒遗传变化大多是随机的,但有些变异被传播,在唾液和鼻腔样本中存在不同的病毒种群.
科学领域:
- 病毒学 病毒学
- 进化生物学 进化生物学
- 基因组学就是基因组学.
背景情况:
- 全球SARS-CoV-2的演变受宿主内部动态的影响.
- 宿主免疫史影响病毒进化.
- 了解急性感染的进化轨迹至关重要.
研究的目的:
- 在急性感染期间描述SARS-CoV-2在宿主内部的演变.
- 在接种疫苗和未接种疫苗的个体中比较病毒进化动态.
- 为了研究样本地点之间的病毒遗传细分.
主要方法:
- 每天对31个人的唾液和鼻腔样本进行测序.
- 纵向采样策略用于检测高可信度变种.
- 对突变积累和变异动态的分析.
主要成果:
- 纵向采样揭示了不经常采样所遗漏的进化动态.
- 主体内病毒动态在接种疫苗和未接种疫苗的个体中基本上是随机的.
- 在唾液和鼻腔样本之间观察到SARS-CoV-2变异的显著遗传细分.
结论:
- 每日采样提供了宿主内SARS-CoV-2进化的高分辨率概况.
- 随机过程,选择,遗传漂移和空间分类塑造了病毒的进化.
- 罕见的适合传播的变体从宿主内部的进化中出现.
更多相关视频
12:21A Mouse Model for the Transition of Streptococcus pneumoniae from Colonizer to Pathogen upon Viral Co-Infection Recapitulates Age-Exacerbated Illness
Published on: September 28, 2022
2.5K
09:02Infection of Primary Nasal Epithelial Cells Grown at an Air-Liquid Interface to Characterize Human Coronavirus-Host Interactions
Published on: September 22, 2023
1.5K
相关概念视频
Single Nucleotide Polymorphisms-SNPs
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Coronavirus
Coronaviruses, including the severe acute respiratory syndrome coronavirus (SARS-CoV), are enveloped viruses characterized by their single-stranded, positive-sense RNA genome and helical nucleocapsid structure. The hallmark of these viruses is their club-shaped spike (S) glycoproteins that protrude from the viral envelope, facilitating attachment to host cells. Typically, coronaviruses infect the upper respiratory tract, often causing mild or asymptomatic disease. However, certain strains like...
Respiratory Syncytial Virus Disease
Human respiratory syncytial virus (RSV) is a widespread pathogen that primarily targets infants and young children but also poses a serious health risk to elderly and immunocompromised individuals. Belonging to the Pneumoviridae family, RSV is a negative-sense, single-stranded RNA virus within the Pneumovirus genus. Its global health burden is significant, with millions of cases annually resulting in hospitalizations and mortality, particularly in resource-limited settings. Although most...
