PyComp:用于高通量虚拟药物查中的高效数据提取,转换和管理的多功能工具
Mohsen Sisakht1, Mohammad Keyvanloo Shahrestanaki2, Jafar Fallahi1
1Molecular Medicine Department, School of Advanced Medical Sciences and Technologies, Shiraz University of Medical Sciences, Shiraz, Iran.
Current computer-aided drug design
|January 9, 2024
概括
PyComp软件通过高效管理和转换大型复合数据集以进行虚拟查来加速药物发现. 该工具简化了数据处理,节省了研究人员在识别潜在药物候选者的时间和精力.
科学领域:
- 计算化学是一种计算化学.
- 化学信息学 化学信息学
- 药物发现 药物发现
背景情况:
- 虚拟查 (VS) 对于识别候选药物至关重要.
- 在各种格式中处理大型复合数据集带来了挑战.
- 有效的数据管理对于计算药物发现至关重要.
研究的目的:
- 开发一个软件工具,以简化VS中的复合数据管理.
- 为大规模查提高数据转换和检索的效率.
主要方法:
- 开发了PyComp,这是一个基于Python的软件工具,使用PyQt5.
- 将PyComp编译成一个可执行文件,以便用户可访问.
- 实现功能来检索和转换复合名称,ID或SMILES字符串到3D格式.
主要成果:
- PyComp显著提高了对VS的数据提取,转换和存储的效率.
- 该工具处理错误识别的化合物,并搜索类似结构.
- PyComp提供了一个用户友好的,可定制的解决方案,用于大规模的复合数据管理.
结论:
- PyComp有效地解决了高吞吐量VS数据管理方面的挑战.
- 该软件提高了大规模药物查的效率和成功.
- PyComp加速了潜在的治疗化合物的发现.
相关概念视频
Drug Elimination by Renal Route: Tubular Reabsorption
3.4K
During the process of renal excretion, as the glomerular filtrate progresses to the distal convoluted tubule (DCT), drugs that are highly permeable, lipophilic, and nonionized undergo passive reabsorption from the tubular fluid into the surrounding peritubular capillaries. This reabsorption process restricts their elimination through the kidneys. However, the majority of drugs are either weak acids or weak bases, and their ionization level is dependent on pH. By altering the pH of urine, the...
3.4K
Drug Elimination: Non-Renal Routes
2.3K
The liver plays a pivotal role in eliminating drugs and their metabolites, primarily through a process known as biliary excretion. This process involves the hepatocytes, the primary cells in the liver that generate bile. A range of transporters actively expels polar drugs or hydrophilic drug metabolites into the bile, which transports the drugs and metabolites into the small intestine. From here, they are eventually expelled from the body through feces. In some instances, the original drug or a...
2.3K
Drug Elimination by Renal Route: Tubular Secretion
2.4K
Once the process of glomerular filtration is completed, blood carrying unfiltered drug molecules traverses through efferent arterioles and makes its way into the peritubular capillaries in the proximal tubule. A variety of carriers play a pivotal role in actively secreting drugs from these peritubular capillaries into the tubular fluid. The organic anion transporter transfers acidic drugs, against an electrochemical gradient, from the peritubular capillaries into the renal tubule cells and...
2.4K
Drug Concentrations: Measurements
374
Drug concentration is the quantity of a drug present in a biological sample. Measuring drug amounts in biological samples allows the clinician to understand how a drug is absorbed, distributed, metabolized, and excreted. Samples can be obtained through invasive or non-invasive methods. Invasive techniques involve surgical or parenteral interventions to gather blood, cerebrospinal fluid, or tissue biopsy. Conversely, non-invasive approaches provide samples like urine, feces, and saliva.
Plasma...
Plasma...
374


