在信号通路中的组合表达模式
Alejandro A Granados1, Nivedita Kanrar1, Michael B Elowitz1
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Howard Hughes Medical Institute and Department of Applied Physics, California Institute of Technology, Pasadena, CA 91125, USA.
Cell genomics
|January 12, 2024
概括
动物细胞在各种细胞类型中使用重复的通路表达动机,如TGF-β和Notch信号传导中的动机. 这表明细胞以独特的方式利用共同的分子通路.
科学领域:
- 细胞和分子生物学 细胞和分子生物学
- 系统生物学 系统生物学
- 基因组学就是基因组学.
背景情况:
- 动物细胞利用具有差异表达的变异组件 (配体,受体) 的分子通路.
- 细胞特异性表达特征可能会根据细胞环境量身定制路径功能.
- 了解这些表达特征在细胞类型中的分布和反复性至关重要.
研究的目的:
- 在多种细胞类型中识别和表征反复的通路表达特征,称为"动机".
- 研究这些图案在不同细胞类型和发育阶段的分布.
- 探索这些图案中的组合式共同表达模式.
主要方法:
- 对单细胞基因表达数据集的分析.
- 在核心分子路径中识别反复表达型号 (动机).
- 检查动机共同表达模式和跨细胞类型的相关性.
主要成果:
- 在核心通路中发现广泛分布的通路表达动机,包括TGF-β,Notch,Wnt和SRSF拼接因子.
- 图案涉及多个路径组件的组合性共同表达.
- 在成年细胞和发育过程中的途径之间观察到动机使用的弱相关性.
结论:
- 细胞组织可以被视为一幅马赛克,不同的细胞类型在不同的功能模式中采用共同的途径.
- 途径表达基因为了解细胞类型特定的途径调节提供了一个框架.
- 这些发现突出了多细胞生物体中分子通路的组合和上下文依赖的使用.
相关概念视频
Interactions Between Signaling Pathways
6.3K
Signaling cascades usually lack linearity. Multiple pathways interact and regulate one another, allowing cells to integrate and respond to diverse environmental stimuli.
Convergence and divergence, and cross-talk between signaling pathways
Two distinct signaling pathways can converge on a single functional unit, which may either be a single protein or a complex of proteins. The response is either functionally distinct or synergistic between the two pathways but different from the response...
Convergence and divergence, and cross-talk between signaling pathways
Two distinct signaling pathways can converge on a single functional unit, which may either be a single protein or a complex of proteins. The response is either functionally distinct or synergistic between the two pathways but different from the response...
6.3K
Assembly of Signaling Complexes
5.8K
Multiprotein signaling complexes are formed in a dynamic process involving protein-protein interactions at the cytoplasmic domain of transmembrane receptors or enzymatic and non-enzymatic proteins associated with the receptor. These complexes ensure the activation and propagation of intracellular signals that regulate cell functions.
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
5.8K
Diversity in Cell Signaling Responses
6.4K
The physiological function of a cell and cellular communication are outcomes of a range of extrinsic signals, intracellular signaling pathways, and cellular responses. No two cell types express the same repertoire of signaling components. Receptors are highly selective for their cognate ligands, but once activated, they can alter multiple cellular processes such as DNA transcription, protein synthesis, and metabolic activity.
Graded and Abrupt Responses
Some signaling systems generate...
Graded and Abrupt Responses
Some signaling systems generate...
6.4K
MAPK Signaling Cascades
5.5K
Mitogen-activated protein kinase, or MAPK pathway, activates three sequential kinases to regulate cellular responses such as proliferation, differentiation, survival, and apoptosis. The canonical MAPK pathway starts with a mitogen or growth factor binding to an RTK. The activated RTKs stimulate Ras, which recruits Raf or MAP3 Kinase (MAPKKK), the first kinase of the MAPK signaling cascade. Raf further phosphorylates and activates MEK or MAP2 Kinases (MAPKK), which in turn phosphorylates MAP...
5.5K
Combinatorial Gene Control
8.3K
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
8.3K
Amplifying Signals via Enzymatic Cascade
8.5K
When a ligand binds to a cell-surface receptor, the receptor's intracellular domain changes shape, which may either activate its enzyme function or allow its binding to other molecules. The initial signal is amplified by most signal transduction pathways. This means that a single ligand molecule can activate multiple molecules of a downstream target. Proteins that relay a signal are most commonly phosphorylated at one or more sites, activating or inactivating the protein. Kinases catalyze...
8.5K


