番茄短链cis-Prenyltransferase中独特的N终端区域和C终端保存基因之间的结构功能相关性
Riki Imaizumi1, Hiroaki Matsuura2, Taro Yanai1
1Department of Material Chemistry, Graduate School of Natural Science and Technology, Kanazawa University, Kakuma, Kanazawa, 920-1192, Japan.
番茄二酸盐 (C10) 合成酶 (NDPS1) 中的二硫化键会影响二聚体稳定性和催化效率. 结构分析揭示了动态的N-终端和C-终端区域,这表明了酶活性的合作机制.
科学领域:
- 酶学 是一种酶学.
- 结构生物学 结构生物学
- 植物生物化学 植物生物化学
背景情况:
- 尼里二酸盐 (C10) 合成酶 (NDPS1) 是来自番茄的同位体 cis-prenyltransferase.
- NDPS1含有四个二硫化物键,其中两个是在N终端区域的互子单元.
研究的目的:
- 研究二硫化物键在NDPS1稳定性和催化效率中的作用.
- 阐明NDPS1.1的结构多态和C端异质性.
- 了解涉及N端和C端区域动态的催化机制.
主要方法:
- 局部定向突变发生以研究二硫化物键的形成.
- 大规模的数据收集和分层聚类分析用于结构多态的识别.
- 复合基质和基质模拟的NDPS1的X射线晶体学.
主要成果:
- 二硫化物键的形成显著影响NDPS1二极体的稳定性和催化效率.
- 确定了结构多态和连接体结合模式变异.
- 在C端区域的异质性,包括RXG图案,表明交替的封闭和开放的活性站位状态.
- 在RXG图案中保存的甘氨酸残留物是必不可少的,不能被替代.
结论:
- 二硫化物键对NDPS1的结构和功能至关重要.
- 在N端和C端区域的动态转换,特别是RXG图案,可能会调节活动站点的可访问性.
- 建议N端和C端区域的合作结构变化是NDPS1催化机制的关键.
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