进化塑造了表观症和特定蛋白质结合的相互作用模式,在一个两组合信号系统中.
1Center for Theoretical Interdisciplinary Sciences, Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang, 325001, PR China.
Communications chemistry
|January 17, 2024
概括
进化通过改变氨基酸位置来塑造蛋白质相互作用,从而影响两组合信号系统中的结合特异性. 这项研究揭示了进化力量如何在蛋白质家族中优化这些模式.
科学领域:
- 分子生物学分子生物学
- 进化生物学 进化生物学
- 生物物理学的生物物理.
背景情况:
- 蛋白质序列,结构和功能通过氨基酸相互作用模式密切联系在一起.
- 了解进化力量如何塑造这些模式,特别是长距离的表观和结合特异性,是一个关键的挑战.
- 双组件信号传输 (TCS) 系统为研究这些进化动态提供了一个模型.
研究的目的:
- 研究进化力量如何塑造TCS系统中的相互作用模式.
- 阐明了长距离表现和结合特异性背后的机制.
- 区分全家族保存和结构特定的相互作用模式.
主要方法:
- 对同源序列的综合全家族进化分析.
- 采用TCS系统的结构导向演变模拟.
- 分析了合保护模式及其分布.
主要成果:
- 氨基酸位置之间的合保护遵循一种类似于功率定律的分布.
- 高度保存的位置稀疏,但集中在结合表面和疏水核中.
- 结构特定的模式揭示了对合作伙伴适应局部挫折的优化.
- 结合特异性是通过直接相互作用和长距离表达作用来调节的.
结论:
- 进化在整个家族和结构特定的层面上塑造了蛋白质相互作用模式.
- 这些进化过程对于适应TCS系统中的绑定特异性至关重要.
- 该研究提供了对序列变化,结构和功能进化之间的相互作用的见解.
相关概念视频
Epistasis
46.8K
In addition to multiple alleles at the same locus influencing traits, numerous genes or alleles at different locations may interact and influence phenotypes in a phenomenon called epistasis. For example, rabbit fur can be black or brown depending on whether the animal is homozygous dominant or heterozygous at a TYRP1 locus. However, if the rabbit is also homozygous recessive at a locus on the tyrosinase gene (TYR), it will have an unshaded coat that appears white, regardless of its TYRP1...
46.8K
Epistasis Analysis
5.0K
Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
5.0K
Assembly of Signaling Complexes
5.8K
Multiprotein signaling complexes are formed in a dynamic process involving protein-protein interactions at the cytoplasmic domain of transmembrane receptors or enzymatic and non-enzymatic proteins associated with the receptor. These complexes ensure the activation and propagation of intracellular signals that regulate cell functions.
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
5.8K
Interactions Between Signaling Pathways
6.3K
Signaling cascades usually lack linearity. Multiple pathways interact and regulate one another, allowing cells to integrate and respond to diverse environmental stimuli.
Convergence and divergence, and cross-talk between signaling pathways
Two distinct signaling pathways can converge on a single functional unit, which may either be a single protein or a complex of proteins. The response is either functionally distinct or synergistic between the two pathways but different from the response...
Convergence and divergence, and cross-talk between signaling pathways
Two distinct signaling pathways can converge on a single functional unit, which may either be a single protein or a complex of proteins. The response is either functionally distinct or synergistic between the two pathways but different from the response...
6.3K
Protein Complexes with Interchangeable Parts
2.5K
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.5K
Protein-protein Interfaces
12.5K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
12.5K


