细胞和组织特异性糖基化途径由单细胞转录组学提供信息
Panagiotis Chrysinas1, Shriramprasad Venkatesan1, Isaac Ang2
1Department of Chemical and Biological Engineering, University at Buffalo-SUNY, Buffalo, NY, 14260, USA.
bioRxiv : the preprint server for biology
|January 23, 2024
概括
单个人体细胞表达了大约一半的潜在糖基因,具有明显的层次结构和组织特异性模式. 转录因子揭示了在各种器官系统中对糖基化过程的协调控制.
科学领域:
- 葡萄糖科学 葡萄糖科学
- 单细胞生物学 单细胞生物学
- 人类基因组学 人类基因组学
背景情况:
- 单细胞研究在生物学上取得了很大的进步,但在葡萄糖科学方面发展不足.
- 了解细胞糖化对各种生物过程至关重要.
研究的目的:
- 分析人类组织和细胞类型中单细胞糖原表达.
- 为了识别糖基化途径中的层次结构和模式.
- 为了探索调节糖化酶的转录因子.
主要方法:
- 来自"智慧表"数据集的单细胞RNA测序数据的分析.
- 使用一种特定于糖化基因的基因本体学 (GlycoEnzOnto).
- 研究了糖基因和转录因子表达模式.
主要成果:
- 单个细胞在中位数测序深度检测到400个糖基因中的40-50个,和在200个.
- 观察到的层次结构:核酸-糖合成/运输 > 核心酶 > 甘氨酸修饰 > 终端修饰.
- 细胞类型显示基于器官/组织来源的可变糖路表达,表明细微的模式.
- 鉴定了核心生物合成和终端修饰的独特的转录因子分组.
结论:
- 平均人类细胞表达了大约一半的葡萄糖基因库.
- 糖化模式是细胞和组织特异的,受器官起源的影响.
- 转录因子在协调各种糖化过程中发挥着关键作用.
- 提供了网络工具来探索这些复杂的相互连接.
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