对Sen1转位性质的单分子表征提供了对真核细胞因子依赖转录终结的洞察
Shuang Wang1,2,3, Zhong Han4, Terence R Strick3,5
1Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, 100190 Beijing, China.
Nucleic acids research
|January 23, 2024
概括
对于转录终止而言,SEN1螺旋酶至关重要. 单分子研究揭示了它的运动机制和与RNA聚合酶II的关键相互作用,这对于真核生物转录终结至关重要.
科学领域:
- 分子生物学分子生物学
- 生物化学 生物化学
- 遗传学 遗传学 是一个
背景情况:
- Sen1是Saccharomyces cerevisiae中必不可少的酶,对于因子依赖转录终止至关重要.
- Sen1的精确分子运动机制,特别是它与RNA聚合酶II (Pol II) 的相互作用,仍然不完全理解.
研究的目的:
- 阐明调控Sen1对RNA聚合酶II复合物的作用的分子运动决定因素.
- 研究 Sen1 特定域在其转移活动和终止效率中的作用.
主要方法:
- 利用单分子实验量化Sen1转位动态.
- 分析了单链DNA (ssDNA) 上的Sen1转位与野生类型和域删除变体.
主要成果:
- Sen1在ssDNA上表现出高的转位率,过程性和ATP亲和力.
- 删除N和C终端域,或子子域的部分,改变转位属性 (例如,增加速率,减少进程性).
- 尽管引擎参数发生了变化,但终结效率显著下降,关键的拓中间体的形成减少,这表明尖端在Pol II相互作用中发挥了关键作用.
结论:
- Sen1通过详细的rho-like机制运行.
- 对于细胞中高效的因子依赖转录终结来说,Sen1 prong子域和Pol II复合体之间的关键相互作用是必不可少的.
相关概念视频
Transcription Attenuation in Prokaryotes
15.3K
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure. Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
15.3K
Transcription Elongation Factors
10.9K
Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
10.9K
Bacterial Transcription
28.2K
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
28.2K
Transcription Initiation
16.4K
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
16.4K
RNA Polymerase II Accessory Proteins
9.2K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.2K
Chromatin Structure Regulates pre-mRNA Processing
7.0K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
7.0K


