内在蛋白质障碍不足以驱动胚胎转录因子中的亚核聚类
Colleen E Hannon1, Michael B Eisen1
1Howard Hughes Medical Institute, University of California, Berkeley, United States.
eLife
|January 26, 2024
概括
转录因子中的内在无序区域 (IDR) 不驱动核聚类. 删除IDRs并没有影响活胚胎中的转录因子聚类,这表明其他机制在发挥作用.
科学领域:
- 细胞生物学 细胞生物学
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
背景情况:
- 转录等核功能发生在空间受限的集群中.
- 转录因子 (TF) 形成高度的亚核,可能调节RNA合成.
- 本质上无序的区域 (IDR) 在TF中很常见,并假设驱动TF集群.
研究的目的:
- 直接测试IDRs驱动转录因子的亚核聚类的假设.
- 调查IDRs在TFs核心内的空间组织中的作用.
主要方法:
- 开发了一种新的算法来识别Drosophila*蛋白质组中的IDR.
- 从*Drosophila*早期胚胎TFs创建了一个IDR库.
- 在 *Drosophila* 施耐德-2 (S2) 细胞和活胚胎中进行了高通量成像屏幕.
主要成果:
- 单独表达的IDR并没有诱导亚核集群.
- 在全长TF中经常观察到聚类,但在删除IDR时没有.
- 活体胚胎中TFs的亚核聚类不受IDR序列的删除的影响.
结论:
- IDRs不足以驱动转录因子的亚核聚类.
- 核中TFs的聚类可能是由IDR以外的机制驱动的.
- 表明IDR在转录调节中的作用更复杂,超出了驱动集群.
关键词:
D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. D. melanogaster. melanogaster. D. melanogaster. melanogaster. D. melanogaster. D. melanogaster. melanogaster. D.染色体是一种染色体.同焦点显微镜的共焦显微镜.基因表达的基因表达方式蛋白质障碍是一种蛋白质障碍.蛋白质结构预测 蛋白质结构预测转录因子是一种转录因子.相关概念视频
RNA Polymerase II Accessory Proteins
9.2K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.2K
Chromatin Structure Regulates pre-mRNA Processing
7.0K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
7.0K
General Transcription Factors
5.3K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
5.3K
Intrinsically Disordered Proteins
17.8K
Intrinsically disordered proteins are a group of proteins that do not fold into specific three-dimensional structures. Their structural flexibility allows them to complement ordered proteins to perform functions that are inaccessible to rigid structures. They are more common in eukaryotes than prokaryotes and may either be exclusively intrinsically disordered or hybrid proteins, consisting of a mix of ordered and disordered regions. The absence of a rigid structure in these proteins can be...
17.8K
Transcription Factors
75.8K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
75.8K
Chromatin Position Affects Gene Expression
23.3K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area.
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
23.3K


