呼吁在肠道神经系统中对细胞身份进行统一和多模式的定义
Homa Majd1,2, Andrius Cesiulis1,2, Ryan M Samuel1,2
1Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.
bioRxiv : the preprint server for biology
|January 31, 2024
概括
绘制肠道神经元多样性的地图对于了解肠道神经系统 (ENS) 和其疾病至关重要. 目前的转录学数据需要验证和与其他技术集成,以获得准确的功能注释.
科学领域:
- 神经科学是一个神经科学.
- 胃肠病学 胃肠病学
- 基因组学就是基因组学.
背景情况:
- 肠道神经系统 (ENS) 是胃肠道内的一个复杂的神经网络.
- 单细胞转录基因技术最近推进了对ENS细胞类型的表征.
- 了解ENS神经元的多样性对于诊断和治疗肠道神经病变至关重要.
研究的目的:
- 为了比较和对比独立报告的小鼠和人类ENS数据集的功能注释.
- 突出需要在ENS研究中改进数据验证和整合.
- 提出一个范式的转变,向全面的ENS表征.
主要方法:
- 差异性基因表达分析
- 模块评分,共同表达和相关性分析.
- 层次聚类,数据集成和标签转移等.
主要成果:
- 在ENS数据集的功能注释中存在实质性的差异,通常是由于过度依赖转录学而没有组织验证.
- 目前的计算和湿实验室技术需要协调和进步,以便精确地注释ENS细胞身份.
- 显然需要扩展组织来源和创新技术,如多重成像和空间转录学.
结论:
- 肠道神经元的准确功能映射需要将转录组学与多组学方法 (表观基因组,蛋白质组,代谢组) 以及先进的成像/电生理学相结合.
- 人类多能干细胞 (hPSC) 模型提供了一个可扩展的平台来研究人类ENS的血统和功能.
- 大规模的协作努力和研究投资对于进一步了解ENS细胞复杂性和功能至关重要.
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