分子变形的拓学诱导了三相捕获键在精选的in-ligand键中
Casey O Barkan1, Robijn F Bruinsma1
1Department of Physics and Astronomy, University of California, Los Angeles, CA 90095.
概括
一个新的理论解释了选择蛋白如何在滑动和捕获结合之间切换. 微小的变化改变了力响应,这个模型揭示了潜在的机制,质疑现有的理论.
科学领域:
- 生物物理学的生物物理.
- 分子生物学分子生物学
- 生物化学 生物化学
背景情况:
- 蛋白质 - 配体相互作用在生物学中至关重要.
- 选择蛋白质表现出复杂的依赖力行为 (滑动,捕捉滑动,滑动-捕捉-滑动).
- 了解这些行为背后的物理机制是一个长期存在的挑战.
研究的目的:
- 为了提出一个统一的理论,选择在-配体捕获结合.
- 解释微小的结构变化如何导致多样化的力反应.
- 研究不同结合行为之间相互转换的物理机制.
主要方法:
- 开发一个结构动机的自由能源景观模型.
- 分析分子系统中因力诱导的变形的拓.
- 模型预测与选择性行为实验观测的比较.
主要成果:
- 自由能源景观模型成功地解释了观察到的全范围的选择性-连接体结合行为.
- 强力诱导的键断裂路径表现出非微不足道的变形.
- 解绑动力学被证明对施加的力非常敏感.
结论:
- 一个单一的结构机制可以解释在特定物质中的各种强度依赖的结合模式.
- 贝尔理论被广泛用于捕获债券建模,但它存在显著的局限性.
- 开发的方法为研究其他蛋白质 - 配体捕获键系统提供了一个框架.
相关概念视频
Intracellular Signaling Affects Focal Adhesions
2.7K
Integrins act both as extracellular input receivers and as intracellular processing activators. As their name suggests, integrins are entirely integrated into the membrane structure. Their hydrophobic membrane-spanning regions interact with the phospholipid bilayer's hydrophobic region. These membrane receptors provide extracellular attachment sites for effectors like hormones and growth factors. They activate intracellular response cascades when their effectors are bound and active.
Some...
Some...
2.7K
Ligand Binding and Linkage
4.8K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.8K
Noncovalent Attractions in Biomolecules
50.7K
Noncovalent attractions are associations within and between molecules that influence the shape and structural stability of complexes. These interactions differ from covalent bonding in that they do not involve sharing of electrons.
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
50.7K
Ligand Binding Sites
12.8K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
12.8K
Protein-protein Interfaces
12.5K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
12.5K
Selectins
3.3K
Cell adhesion is an essential aspect of multicellularity. While stable cell interactions usually occur between cells of the same type, transient cell interactions occur between cells of different tissue types, such as between neutrophils and endothelial cells. Selectins are one class of cell adhesion molecules (CAMs) that bind carbohydrate ligands to form transient cell adhesion. They are rod-like proteins with a long extracellular part of variable length ending with the lectin domain,...
3.3K


