植物的读透事件揭示了停止编码子的可塑性
Yuqian Zhang1, Hehuan Li2, Yanting Shen3
1National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan, China; School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia.
Cell reports
|February 1, 2024
概括
停止密码子读透 (SCR) 在植物中很常见,停止密码子被重新编码为氨基酸. 这项研究揭示了对遗传解码灵活性和蛋白质进化的洞察力.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 蛋白质组学是指蛋白质组学.
背景情况:
- 停止密码子读透 (SCR) 是一个具有重大影响的生物过程,但它仍然在很大程度上没有被描述.
- 了解SCR对于全面了解基因表达和蛋白质多样性至关重要.
研究的目的:
- 在植物中使用蛋白质基因组方法识别和表征停止密码子读透 (SCR) 事件.
- 为了研究停止编码子的重编码潜力和SCR在植物蛋白质组中的功能后果.
主要方法:
- 蛋白质基因组策略,以识别跨植物物种的SCR事件.
- 质谱测量以验证停止编码子重编码和识别扩展的蛋白质.
- 对转录特征,tRNA概况和蛋白质结构变化的分析.
主要成果:
- 在植物中确定了1009个SCR事件,其中SCR转录通常具有更短的长度和更少的异构体.
- 在SCR事件中停止编码子可以重新编码为20个标准氨基酸,由质谱学和tRNA分析支持.
- 观察到玉米扩展蛋白中的功能信号,并对基本转录因子3的结构变化进行了表征.
结论:
- 停止编码子读透事件在植物中很普遍,扩大了已知的遗传解码谱.
- 在扩展的蛋白质上,停止编码子重编码和蛋白质编码选择的可塑性为蛋白质进化和功能提供了新的见解.
相关概念视频
Leaky Scanning
5.1K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.1K
Overview of Transposition and Recombination
15.5K
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
15.5K
Riboswitches
8.1K
Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
8.1K
From DNA to Protein
18.4K
The flow of genetic information in cells from DNA to mRNA to protein is described by the central dogma, which states that genes specify the sequence of mRNAs, which in turn specify the sequence of amino acids making up all proteins. The decoding of one molecule to another is performed by specific proteins and RNAs. Because the information stored in DNA is so central to cellular function, it makes intuitive sense that the cell would make mRNA copies of this information for protein synthesis...
18.4K
Nonsense-mediated mRNA Decay
10.6K
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
10.6K
Alternative RNA Splicing
21.2K
Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
21.2K


