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来自中国的209只本地的全基因组变异数据集
Xiaodong Tan1, Jiawen Zhang1, Jie Dong1
1Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
Scientific data
|February 5, 2024
概括
对当地品种的基因分析揭示了改善肉质和生产力的关键标记. 全基因组测序确定了数百万个遗传变异,有助于繁殖和保护工作.
科学领域:
- 动物遗传学动物遗传学
- 基因组学就是基因组学.
- 畜牧养殖 畜牧养殖 畜牧养殖
背景情况:
- 与商业品种相比,本地品种提供更优质的肉质和风味.
- 然而,当地品种的生产率通常较低,包括增长速度较慢和体重减轻.
- 基因改进对于提高生产绩效,同时保护宝贵的遗传资源至关重要.
研究的目的:
- 为了对当地品种进行全基因组测序.
- 识别与经济特征相关的遗传标记和候选基因.
- 促进养计划,以提高产量和保护遗传资源.
主要方法:
- 来自13个当地品种的209个个体的全基因组测序.
- 高质量的序列数据生成>90% Q30读取率和>99%映射率.
- 使用GRCg7b参考基因组识别单核酸多态 (SNPs) 和插入删除 (InDels).
主要成果:
- 获得了高质量的测序数据和优秀的基因组覆盖率 (97.6%).
- 确定了超过1900万个SNP和198万个INDEL.
- 创建了一个有价值的数据集,供公众在遗传学研究中使用.
结论:
- 全基因组测序提供了对当地的遗传多样性和适应性的见解.
- 鉴定出的基因变异是开发具有增强特征的新品种的资源.
- 这项研究支持加速繁殖进步和有效保护当地的遗传资源.
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