螺旋形成的阿里尔-三醇折叠机的依赖溶剂的折叠行为
Sibali Debnath1, Amar H Flood1, Krishnan Raghavachari1
1Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States.
The journal of physical chemistry. B
|February 7, 2024
概括
溶剂的极性决定了芳香折叠分子的折叠. 分子动力学模拟显示,低极性溶剂有利于展开的状态,而高极性溶剂则通过solvophobic崩诱导螺旋折叠.
科学领域:
- 超分子化学 超分子化学
- 计算化学计算化学
- 生物分子建模模型
背景情况:
- 芳香折叠分子是具有螺旋结构的生物灵感分子.
- 它们的功能取决于受控的线圈螺旋折叠偏好.
- 关于折叠机折叠的实验研究丰富,但理论见解有限.
研究的目的:
- 为了研究溶剂极性的影响,在状折叠的烯酸-二醇折叠体.
- 通过使用计算方法,为折叠机折叠机制提供原子级的洞察力.
主要方法:
- 进行了全原子分子动力学 (MD) 模拟.
- 使用复制品交换MD模拟与增强的采样.
- 使用时间依赖密度函数理论 (TD-DFT) 计算了电子循环二元化 (ECD) 光谱.
主要成果:
- 在低极性二甲 (DCM) 中,折叠剂主要存在于未折叠状态,具有反平行三醇排列.
- 在较高极度的乙 (MeCN) 中,solvophobic 崩将折叠体驱动到具有平行,同步排列的三子的螺旋形状.
- 在这两种溶剂中,中间形状较少.
结论:
- 溶剂极性是控制-二醇折叠体形状的一个关键因素.
- MD模拟成功阐明了由溶剂效应驱动的折叠机制.
- 通过将实验数据与计算的ECD光谱相关联来分配左撇子螺旋手性.
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