基于分子动态的结合途径的识别和两个不同的高 afinity 网站的 succinate 在 succinate 受体 1/GPR91 的 succinate
Aslihan Shenol1, Michael Lückmann1, Mette Trauelsen1
1Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Molecular cell
|February 7, 2024
概括
这项研究揭示了SUCNR1受体如何感知代谢应激信号,如糖酸盐. 一种特定的阿基尼因基因捕获了苏酸盐,影响了它向结合部位的移动,并可能需要对受体激活进行双重占用.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 药理学 药理学是指药理学的学科.
背景情况:
- 酸盐受体1 (SUCNR1) 作为代谢压力信号的传感器,酸盐.
- 了解SUCNR1的配体结合机制对于代谢疾病研究至关重要.
研究的目的:
- 阐明酸盐与SUCNR1.1结合的分子机制.
- 描述特定结构图案在简单捕获和激活中的作用.
主要方法:
- 无监督的分子动力学 (MD) 模拟 (170.400 ns).
- 在人体,小鼠和老鼠SUCNR1.1中进行局部定向的突变发生.
- 超动力学模拟用于分析绑定能量景观.
主要成果:
- 在TM-VI附近的一个五氨酸基因图案促进了细胞外前庭 (ECV) 中初始的氨酸捕获.
- 酸盐结合涉及ECV和orthosteric部位的低能量状态,其中一个能量屏障涉及ECL-2b解锁.
- 经常观察到两个酸盐分子的同时结合 (顺序或绕过模式).
- 反对者NF-56-EJ40在没有解锁ECL-2b的情况下结合.
结论:
- 在高酸盐度下,选择性SUCNR1激活可能需要高亲和度酸盐结合点的双重占用.
- 这些发现提供了关于SUCNR1在感知代谢应激和潜在治疗向方面的作用的见解.
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