同义突变可以通过局部化接口错误折叠改变蛋白质二元化,涉及自我纠.
Pham Dang Lan1, Daniel Allen Nissley2, Ian Sitarik2
1Institute for Computational Sciences and Technology, Ho Chi Minh City, Viet Nam; Faculty of Physics and Engineering Physics, VNUHCM-University of Science, 227, Nguyen Van Cu Street, District 5, Ho Chi Minh City, Viet Nam.
Journal of molecular biology
|February 10, 2024
概括
同名突变通过在合成过程中创建非原生纠来改变蛋白质二元化. 这些结构变化会影响蛋白质的稳定性和功能,影响核糖酶,但不会影响T核糖酶.
科学领域:
- 分子生物学分子生物学
- 生物物理学的生物物理.
- 计算生物学 计算生物学
背景情况:
- 同名突变,不改变氨基酸序列,可以意外地影响蛋白质功能.
- 蛋白质与蛋白质的相互作用和二分化对于细胞过程至关重要.
- 了解mRNA序列变异如何影响蛋白质结构和动态是至关重要的.
研究的目的:
- 为了研究同名突变对两个大肠杆菌同体体的二分化的影响:小肠杆菌核糖酶和T核糖酶.
- 阐明由同义突变影响的转化速度影响蛋白质结构和相互作用的分子机制.
- 探索非本地纠在调解这些效应中的作用.
主要方法:
- 来自野生类型,最快和最慢翻译的同名mRNAs的蛋白质的in silico合成.
- 粗粒和全原子分子动力学模拟蛋白质合成,翻译后动力学和二元化.
- 计算蛋白质二次体之间的集体平均相互作用能量的计算.
- 有限蛋白质溶解质谱测试,以验证模拟预测.
主要成果:
- 同名突变显著改变了寡核糖酶二分化,相互作用能量分别为最快和最慢翻译的mRNA增加了4%和10%.
- 核酶T二分化仍然不受同名突变的影响.
- 在错误折叠状态下的非共价拉索纠,取决于转换速度,被确定为改变二分化的结构起源.
- 这些纠状态作为长期存在的动力陷,与改变的二元体构造密切相关.
结论:
- 同名突变可以通过转化依赖的非原生纠的形成影响蛋白质结构和稳定性.
- 在二聚体接口的改变纠提供了一个调节寡聚体结构和稳定性的机制.
- 观察到的效应是蛋白质特异性的,核糖核酶是敏感的,而核糖核酶T不是.
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