农作物-GPA:农作物基因-表型关联的综合平台
Yujia Gao1, Qian Zhou1, Jiaxin Luo1
1School of Information and Artificial Intelligence, Anhui Beidou Precision Agriculture Information Engineering Research Center, Anhui Agricultural University, Hefei, Anhui, 230036, China.
NPJ systems biology and applications
|February 12, 2024
概括
Crop-GPA是一个新的开源平台,用于采矿作物基因表型协会 (GPA). 它使用先进的工具来提取和预测这些关键的关系,帮助分子育种.
科学领域:
- 农业科学 农业科学
- 生物信息学是一种生物信息学.
- 基因组学就是基因组学.
背景情况:
- 农作物中的大规模生物数据正在迅速增加.
- 需要集成的平台来分析作物基因表型数据用于分子育种.
研究的目的:
- 介绍Crop-GPA,这是一个全面的开源平台,用于作物基因-表型关联数据.
- 为研究人员提供数据挖掘,可视化和基因表型关系预测的工具.
主要方法:
- 开发了Crop-GPA平台,具有直观的界面和动态可视化.
- 集成的GPA-BERT用于基于文献的基因表型关联提取.
- 集成的GPA-GCN用于预测新的基因表型关联.
主要成果:
- 农作物GPA提供精选的基因,表型和关联数据.
- GPA-BERT和GPA-GCN促进了自动数据提取和关系预测.
- 在探索作物基因-表型相关性方面证明了平台的实用性.
结论:
- 农作物GPA是作物研究的一个有价值的多功能资源.
- 该平台使研究人员能够更深入地了解作物生物机制.
- 通过数据利用,促进现代分子育种的进步.
相关概念视频
Light Acquisition
8.5K
In order to produce glucose, plants need to capture sufficient light energy. Many modern plants have evolved leaves specialized for light acquisition. Leaves can be only millimeters in width or tens of meters wide, depending on the environment. Due to competition for sunlight, evolution has driven the evolution of increasingly larger leaves and taller plants, to avoid shading by their neighbors with contaminant elaboration of root architecture and mechanisms to transport water and nutrients.
8.5K
Epistasis Analysis
5.0K
Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
5.0K
Plant Breeding and Biotechnology
18.9K
Crop cultivation has a long history in human civilization, with records showing the cultivation of cereal plants beginning at around 8000 BC. This early plant breeding was developed primarily to provide a steady supply of food.
18.9K
Background and Environment Affect Phenotype
6.5K
Although the genetic makeup of an organism plays a major role in determining the phenotype, there are also several environmental factors, such as temperature, oxygen availability, presence of mutagens, that can alter an organism’s phenotype.
An example of how genetic background affects phenotype can be seen in horses. The Extension gene in horses is responsible for their coat color. A wild-type gene (EE) produces black pigment in the coat, while a mutant gene (ee) produces red pigment. A...
An example of how genetic background affects phenotype can be seen in horses. The Extension gene in horses is responsible for their coat color. A wild-type gene (EE) produces black pigment in the coat, while a mutant gene (ee) produces red pigment. A...
6.5K
Trihybrid Crosses
23.3K
Trihybrid Crosses
Some of Mendel’s crosses examined three pairs of contrasting characteristics. Such a cross is called a trihybrid cross. A trihybrid cross is a combination of three individual monohybrid crosses. For example, plant height (tall vs. short), seed shape (round vs. wrinkled), and seed color (yellow vs. green).
The F1 generation plants of a trihybrid cross are heterozygous for all three traits and produce eight gametes. Upon self-fertilization, these gametes have an equal...
Some of Mendel’s crosses examined three pairs of contrasting characteristics. Such a cross is called a trihybrid cross. A trihybrid cross is a combination of three individual monohybrid crosses. For example, plant height (tall vs. short), seed shape (round vs. wrinkled), and seed color (yellow vs. green).
The F1 generation plants of a trihybrid cross are heterozygous for all three traits and produce eight gametes. Upon self-fertilization, these gametes have an equal...
23.3K
Transgenic Plants
7.2K
Recombinant DNA technology called transgenesis is often used to add a foreign gene or remove a detrimental gene from an organism. Such genetically modified organisms are called transgenic organisms.
The first-ever transgenic plant was a tobacco plant developed in 1983 that showed resistance against the tobacco mosaic virus. Since then, many transgenic plants have been developed and commercialized for improving the agricultural, ornamental, and horticultural value of a crop plant. Transgenic...
The first-ever transgenic plant was a tobacco plant developed in 1983 that showed resistance against the tobacco mosaic virus. Since then, many transgenic plants have been developed and commercialized for improving the agricultural, ornamental, and horticultural value of a crop plant. Transgenic...
7.2K


