在QSAR模型中重新思考适用性领域分析
Jose R Mora1, Edgar A Marquez2,3, Noel Pérez-Pérez4
1Departamento de Ingeniería Química, Universidad San Francisco de Quito (USFQ), Instituto de Simulación Computacional (ISC- USFQ), Diego de Robles y Vía Interoceánica, Quito, 170901, Ecuador.
量化结构-活动关系 (QSAR) 模型经常高估可靠性,因为具有挑战性的适用性域 (AD) 估计. 错误分析显示,不可靠的预测聚集在错误较高的子空间中,需要更严格的AD指南和验证.
科学领域:
- 计算化学是一种计算化学.
- 毒理学 毒理学 毒理学
- 药物发现 药物发现
背景情况:
- 量化结构-活动关系 (QSAR) 模型被广泛使用,但通常会产生过于乐观的预测.
- 适用性域 (AD) 的估计是QSAR建模的关键但具有挑战性的方面,影响预测可靠性.
研究的目的:
- 调查QSAR模型预测和适用性域 (AD) 估计的可靠性.
- 为AD分析和模型改进策略提出改进建议.
主要方法:
- 将基于树的错误分析工作流应用于来自QsarDB存储库的五个QSAR模型.
- 分析了雄激素受体生物活性和膜透性的模型.
主要成果:
- AD预测错误主要发生在预测错误率最高的子空间中,这表明AD空间不均.
- 证明不可靠的预测不是随机分布的,而是集中在特定的数据子集中.
结论:
- 要求更严格的AD分析指南,包括模型错误分析.
- 提倡对特定模型空间的AD方法进行严格验证.
- 突出了错误分析对于合理的QSAR模型改进和数据扩展的有用性.
更多相关视频
10:29Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
16:02Demonstration of the Sequence Alignment to Predict Across Species Susceptibility Tool for Rapid Assessment of Protein Conservation
Published on: February 10, 2023
相关概念视频
Structure-Activity Relationships and Drug Design
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
Mechanistic Models: Compartment Models in Individual and Population Analysis
Quantitative Aspects of Drug-Receptor Interaction
Analysis Methods of Pharmacokinetic Data: Model and Model-Independent Approaches
The model approach uses mathematical models to describe changes in drug concentration over time. Pharmacokinetic models help characterize drug behavior in patients, predict drug concentration in the body fluids, calculate optimum dosage regimens, and evaluate the risk of toxicity. However, ensuring that the model fits the experimental data accurately...
Model-Independent Approaches for Pharmacokinetic Data: Noncompartmental Analysis
One important characteristic of noncompartmental analyses is that drug exposure increases proportionally with increasing doses. This...
Mechanistic Models: Overview of Compartment Models
