Jove
Visualize
联系我们

相关概念视频

Genome Annotation and Assembly03:36

Genome Annotation and Assembly

18.8K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
18.8K
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

5.7K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.7K
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes02:16

Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes

12.5K
The present-day mitochondrial and chloroplast genomes have retained some of the characteristics of their ancestral prokaryotes and also have acquired new attributes during their evolution within eukaryotic cells. Like prokaryotic genomes, mitochondrial and chloroplast genomes neither bind with histone-like proteins nor show complex packaging into chromosome-like structures, as observed in eukaryotes. Unlike mitotic cell divisions observed in eukaryotic cells, mitochondria and chloroplasts...
12.5K
RNA-seq03:21

RNA-seq

10.0K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
10.0K
Oligosaccharide Assembly01:24

Oligosaccharide Assembly

2.8K
Protein glycosylation starts in the ER lumen and continues in the Golgi apparatus. Glycosyltransferases catalyze the addition of sugar molecules or glycosylation of proteins. Usually, these enzymes add sugars to the hydroxyl groups of selected serine or threonine residues to form O-linked glycans or the amino groups of asparagine residues to form N-linked glycans. Different positions on the same polypeptide chain can contain differently linked glycans.
Multiple sugar molecules that may or may...
2.8K
Genomic DNA in Prokaryotes00:46

Genomic DNA in Prokaryotes

43.9K
The genome of most prokaryotic organisms consists of double-stranded DNA organized into one circular chromosome in a region of cytoplasm called the nucleoid. The chromosome is tightly wound, or supercoiled, for efficient storage. Prokaryotes also contain other circular pieces of DNA called plasmids. These plasmids are smaller than the chromosome and often carry genes that confer adaptive functions, such as antibiotic resistance.
Genomic Diversity in Bacteria
Although bacterial genomes are much...
43.9K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Seqwin: ultrafast identification of signature sequences in microbial genomes.

Bioinformatics (Oxford, England)·2026
Same author

Kente: A Graph-based Pangenomic Approach for Horizontal Gene Transfer Detection in Microbiomes.

bioRxiv : the preprint server for biology·2026
Same author

Path-dependent recovery of the gut microbiome after antibiotics emerges from coupled ecological and evolutionary dynamics.

bioRxiv : the preprint server for biology·2026
Same author

Min-frame transformation enables more sensitive viral genome alignment.

bioRxiv : the preprint server for biology·2026
Same author

GSP Cochlea: A graph signal processing approach for studying sound encoding.

PNAS nexus·2026
Same author

A versatile multi-components mixed model for bacterial-Genome Wide association studies.

Nature communications·2026
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关实验视频

Updated: Jul 3, 2025

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

2.2K

在微生物组中通过长时间读取的联合组装图表检测无参考结构变异.

Kristen D Curry1,2, Feiqiao Brian Yu3, Summer E Vance4

  • 1Rice University, Department of Computer Science, Houston, TX 77005, United States.

bioRxiv : the preprint server for biology
|February 14, 2024
PubMed
概括
此摘要是机器生成的。

这项研究引入了rhea,一种用于检测细菌结构变异 (SVs) 和横向基因转移 (HGT) 在元基因组中的新方法,而不需要参考基因组或元基因组组装基因组 (MAGs). 雷亚准确地识别了复杂社区中的微生物基因组变化.

关键词:
基因转移是转移基因的过程.长时间阅读序列排序.甲基基因组 (metagenome) 是一个基因组.微生物组是一个微生物组.结构变体 结构变体

更多相关视频

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies
12:08

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies

Published on: August 20, 2021

5.1K
Efficient Nucleic Acid Extraction and 16S rRNA Gene Sequencing for Bacterial Community Characterization
12:37

Efficient Nucleic Acid Extraction and 16S rRNA Gene Sequencing for Bacterial Community Characterization

Published on: April 14, 2016

38.7K

相关实验视频

Last Updated: Jul 3, 2025

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

2.2K
Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies
12:08

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies

Published on: August 20, 2021

5.1K
Efficient Nucleic Acid Extraction and 16S rRNA Gene Sequencing for Bacterial Community Characterization
12:37

Efficient Nucleic Acid Extraction and 16S rRNA Gene Sequencing for Bacterial Community Characterization

Published on: April 14, 2016

38.7K

科学领域:

  • 微生物基因组学 微生物基因组学
  • 转基因组学是指转基因组学.
  • 进化生物学是进化的生物学.

背景情况:

  • 细菌基因组动态,包括结构变异 (SV),对于微生物适应和宿主相互作用至关重要.
  • 由于混合菌株和缺乏明确的参考基因组,在元基因组中检测SVs具有挑战性.

研究的目的:

  • 开发一种新型的计算方法,用于在元基因组数据中稳健检测SV和水平基因转移 (HGT).
  • 克服依赖参考基因组或元基因组组装基因组 (MAG) 的现有方法的局限性.

主要方法:

  • 一种新的方法,rhea,利用一个单一的元基因组组合图从一个系列的所有样本.
  • 它分析了样本之间的图表覆盖范围的日志折叠变化,以识别SV和HGT事件.
  • 该方法绕过了对参考基因组或MAG的需求,使用原始读取模式.

主要成果:

  • 在模拟的元基因组中,Rhea在检测SV和HGT方面优于现有方法,特别是在增加菌株多样性和与参考基因差异的情况下.
  • 该方法成功地确定了环境和发酵食品微生物组的序列改变,表明了潜在的宿主优势.

结论:

  • 雷亚为研究各种微生物群落中的细菌基因组动态提供了一种多功能且无参考的方法.
  • 这种方法通过利用所有测序读数来增强我们对微生物进化和适应的理解.