血统图案作为发展模块,用于控制细胞类型比例
Martin Tran1, Amjad Askary2, Michael B Elowitz3
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Developmental cell
|February 15, 2024
概括
血统动机分析 (LMA) 识别细胞发育中的模式,以了解细胞类型是如何形成的. 这种方法揭示了细胞命运承诺如何为生物体的发展和进化做出贡献.
科学领域:
- 发展生物学 发展生物学
- 计算生物学 计算生物学
- 进化生物学 进化生物学
背景情况:
- 多细胞生物需要精确控制细胞类型的产生和比例.
- 细胞命运的承诺往往是概率的,使发育动态的研究复杂化.
- 了解血统树对于推断祖先状态和发育相互作用至关重要.
研究的目的:
- 引入一个新的计算方法 - - 血统动机分析 (LMA).
- 识别在血统树上的细胞命运决定中的统计学上过度代表的模式 (血统动机).
- 了解这些基因是如何反映承诺的原始状态或外部相互作用驱动细胞类型比例的.
主要方法:
- 开发了LMA用于递归识别血统图案.
- 应用LMA来分析斑马鱼,老鼠视网膜和小鼠胚胎发育的已发表数据集.
- 进行了跨脊椎动物物种的比较分析.
主要成果:
- LMA成功地确定了细胞命运承诺的空间和时间组织.
- 揭示了血统图案作为各种物种发育过程的签名.
- 证明了血统图案促进了细胞类型比例的适应性进化变异.
结论:
- LMA提供了一种强大的方法来剖析复杂的发育过程.
- 血统图案为细胞命运决定的模块化基础提供了洞察力.
- 该方法有助于理解脊椎动物细胞类型比例的演变.
更多相关视频
08:10Using Confocal Analysis of Xenopus laevis to Investigate Modulators of Wnt and Shh Morphogen Gradients
Published on: December 14, 2015
11.4K
06:49Analysis of Cell Differentiation, Morphogenesis, and Patterning During Chicken Embryogenesis Using the Soaked-Bead Assay
Published on: January 12, 2022
3.2K
相关概念视频
Lineage Commitment
3.0K
Commitment is the process whereby stem cells:
3.0K
Combinatorial Gene Control
8.3K
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
8.3K
Somatic to iPS Cell Reprogramming
2.2K
Reprogramming alters the gene expression in somatic cells, transforming them into induced pluripotent stem (iPS) cells over several generations. Scientists can reprogram cells by introducing genes for four transcription factors—Oct4, Sox2, Klf4, and c-Myc (OSKM) by viral or non-viral methods. These factors are also known as Yamanaka factors after Shinya Yamanaka, who first generated iPS cells using mouse skin cells. Yamanaka was awarded the Nobel Prize in Physiology or Medicine in 2012...
2.2K
Cells Coordinate Growth and Proliferation
4.5K
Cell size is a significant factor impacting cellular design, function, and fitness. There exists some internal coordination by which cells double their masses before division, thus, achieving homeostasis. Coordination between cell growth and proliferation depends on the checkpoints in between cell cycle phases. Loss of coordination or failure in the checkpoint mechanism can drive the cell to uncontrolled growth and loss of cellular function. Like dividing cells that coordinate cellular growth,...
4.5K
Cellular Differentiation
2.7K
How does a complex organism such as a human develop from a single cell? It all starts from a single fertilized egg which gives rise to a vast array of cell types, such as nerve cells, muscle cells, and epithelial cells that characterize the adult? Throughout development and adulthood, cellular differentiation leads cells to assume their final morphology and physiology. Differentiation is the process by which unspecialized cells become specialized to carry out distinct functions.
A zygote is a...
A zygote is a...
2.7K
Regulation of Expression at Multiple Steps
907
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
907
