复制的抗生素耐药性基因揭示了细菌中持续的选择和水平基因转移
Rohan Maddamsetti1,2, Yi Yao1,2, Teng Wang1,2
1Center for Quantitative Biodesign, Duke University, Durham, NC, USA.
Nature communications
|February 16, 2024
概括
移动遗传元素 (MGE) 可以在抗生素选择下驱动基因重复,从而导致重复的抗生素耐药性基因 (ARG). 这些重复的ARG在来自人类和牲畜的细菌中更为常见.
科学领域:
- 微生物遗传学微生物遗传学
- 进化生物学是进化的生物学.
- 基因组学就是基因组学.
背景情况:
- 水平基因转移 (HGT) 和基因重复是新功能的主要进化驱动因素.
- 移动遗传元素 (MGE) 调解HGT,并具有自我复制的能力.
- MGE选择和基因复制之间的相互作用仍然未被充分探索.
研究的目的:
- 调查MGEs的阳性选择是否可以驱动基因重复.
- 确定抗生素选择在复制抗生素耐药性基因 (ARG) 进化中的作用.
- 评估自然细菌群体中重复的ARG的流行程度.
主要方法:
- 数学建模以模拟进化的动态.
- 在抗生素选择下的实验进化.
- 从数千个细菌分离物中分析长时间读取的基因组序列.
- 检查与细菌基因组相关的生态元数据.
主要成果:
- 抗生素选择通过MGE转移促进重复的ARG的进化.
- 复制的ARG在人类和牲畜环境中的细菌中得到显著丰富.
- 在抗生素耐药临床隔离物中观察到重复的ARG的进一步丰富.
结论:
- 基因复制并不总是独立于HGT机制.
- 选择作用于MGEs可以导致功能基因放大.
- 重复的基因在微生物群落中经常在积极选择和HGT下赋予功能.
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