解开碳水化合物结合模块21 (CBM21) 与氨糖相互作用的动态
Vinicius Ávila Cabral1, Bruna Govoni1, Hugo Verli1
1Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves, 9500, Porto Alegre 91500-970, RS, Brazil.
Carbohydrate polymers
|February 17, 2024
概括
来自Rhizopus oryzae的碳水化合物结合模块21 (CBM21) 使用过渡相互作用来结合碳水化合物,而不是稳定键. 它不寻常的葡萄糖构造在生物环境中不太可能,影响CBM21.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 计算化学计算化学
背景情况:
- 豆的碳水化合物结合模块21 (CBM21) 是一个双位点的CBM.
- 建议CBM21破坏多糖体结构,并作为工业净化标签使用.
- CBM21的晶体结构显示出一个不寻常的葡萄糖 (Glc) 形状 (1S3),其相关性不清楚.
研究的目的:
- 研究1S3 Glc形状在碳水化合物识别中的作用.
- 使用先进的模拟来描述CBM21的蛋白质-碳水化合物结合动态.
- 在原子层面阐明CBM21的作用机制.
主要方法:
- 分子动力学 (MD) 和元动力学模拟.
- 量子力学/分子力学 (QM/MM) 和分子力学 (MM) 的水平.
- 对CBM21与小配体和粉素相互作用的分析.
主要成果:
- 在生理条件下,1S3 Glc形状不太可能发生.
- CBM21表现出暂时且不稳定的结合小联结体.
- 蛋白质二分化和多糖链长度影响复合体的稳定性.
- 在CBM21中,粉素的重复解结/重新结合和切换位子.
结论:
- CBM21通过短暂的相互作用运作,引导碳水化合物到催化部位.
- 该研究提供了对CBM21机制的原子视图,有助于CBM设计.
- 这些发现与优化生物技术应用中的CBM相关.
关键词:
氨糖糖是什么 氨糖糖是什么碳水化合物结合模块 碳水化合物结合模块超动力学是什么?超动力学是什么?分子动力学分子动力学QM/MM QM/MM QM/MM QM/MM QM/MM QM/MM QM/MM QM/MM QM/MM QM/MM QM/MM QM/MM QM/MM QM/MM QM/MM更多相关视频
06:13Determination of Glucan Chain Length Distribution of Glycogen Using the Fluorophore-Assisted Carbohydrate Electrophoresis FACE Method
Published on: March 31, 2022
3.5K
08:53Biochemical and Structural Characterization of the Carbohydrate Transport Substrate-binding-protein SP0092
Published on: October 2, 2017
30.0K
相关概念视频
Oligosaccharide Assembly
2.8K
Protein glycosylation starts in the ER lumen and continues in the Golgi apparatus. Glycosyltransferases catalyze the addition of sugar molecules or glycosylation of proteins. Usually, these enzymes add sugars to the hydroxyl groups of selected serine or threonine residues to form O-linked glycans or the amino groups of asparagine residues to form N-linked glycans. Different positions on the same polypeptide chain can contain differently linked glycans.
Multiple sugar molecules that may or may...
Multiple sugar molecules that may or may...
2.8K
Membrane Carbohydrates
5.4K
The plasma membrane is a dynamic barrier composed of lipids, proteins, and carbohydrates. It is the epicenter of many cellular processes required for cell growth and survival. Carbohydrates have unique structural and chemical properties that help the plasma membrane to carry out its functions effectively.
Membrane carbohydrates do not have any hydrophobic region and are exclusively located on the cell's outer surface. The addition of sugar molecules or glycosylation of proteins happens in...
Membrane carbohydrates do not have any hydrophobic region and are exclusively located on the cell's outer surface. The addition of sugar molecules or glycosylation of proteins happens in...
5.4K
Carbohydrate Digestion
114.7K
Carbohydrate digestion and metabolism break down simple and complex carbohydrates from food into saccharides (i.e., sugars) for the body to use as energy. Carbohydrate digestion starts in the mouth during mastication, or chewing. The masticated carbohydrates remain intact in the stomach. Digestion resumes in the duodenum of the small intestine, where pancreatic alpha-amylase and brush border enzymes of the microvilli convert complex carbohydrates to monosaccharides. Finally, the monosaccharides...
114.7K
Carbohydrate Absorption
725
Carbohydrates are essential macronutrients that serve as the body's primary energy source. Their digestion begins in the mouth, where salivary amylase partially breaks down complex carbohydrates such as starch into smaller oligosaccharides. This mechanical and enzymatic activity prepares carbohydrates for further processing in the gastrointestinal tract.
After being swallowed, the partially digested carbohydrates mix with gastric secretions in the stomach. However, the acidic environment...
After being swallowed, the partially digested carbohydrates mix with gastric secretions in the stomach. However, the acidic environment...
725
