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银色松鼠Pampus argenteus的染色体层次的基因组组合

Jiehong Wei^1,2, Yongshuang Xiao¹, Jing Liu³

¹Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.

Scientific data

|February 23, 2024

概括

我们向您介绍了第一个高质量的染色体层次的基因组组合,用于Pampus argenteus,一个关键的渔业物种. 这种基因组资源有助于未来的水产养殖和保护这类重要鱼类的研究.

科学领域:

基因组学就是基因组学.
水产养殖是水产养殖的一种方式.
海洋生物学海洋生物学

背景情况:

阿根廷海 (Pampus argenteus) 是中国沿海地区的重要渔业物种,面临着资源的减少.
它的特殊形态和日益减少的人口需要对其水产养殖生物学的研究.

研究的目的:

报告第一个高质量的染色体层次基因组组合Pampus argenteus.
为进化,保护和水产养殖研究提供基因组资源.

主要方法:

集成的Illumina,PacBio HiFi和Hi-C测序技术. 这些技术包括:
组装了一个518.06 Mb的基因组,并配备了20.47 Mb和22.86 Mb的N50s.
使用Hi-C数据对24个伪染色体进行了定序列.

主要成果:

创建了一个染色体层次的基因组组合Pampus argenteus.
鉴定了24696个编码蛋白质的基因,其中98.9%是完整的BUSCOs.
观察到与密切相关的Scomber japonicus基因组有着对齐的关系.

结论:

这项研究提供了第一个高质量的染色体层次的基因组为Pampus argenteus.
基因组组装为未来的进化和保护研究提供了宝贵的见解.
这个资源将支持普斯阿根廷水产养殖的进步.

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