FiPhA:用于光纤光度分析的开源平台
Matthew F Bridge1, Leslie R Wilson2, Sambit Panda2
1Social & Scientific Systems, Inc., a DLH Holdings Corp. Company, Durham, North Carolina, United States.
Neurophotonics
|February 26, 2024
概括
纤维光度分析 (FiPhA) 简化了用于行为神经科学的神经数据处理. 这款用户友好的R Shiny应用程序简化了复杂的光纤光度数据分析,节省了研究人员的时间和精力.
科学领域:
- 行为神经科学 行为神经科学
- 神经成像技术的神经成像技术
- 数据分析软件 数据分析软件
背景情况:
- 纤维光度 (FP) 对于监测清醒动物的神经活动和神经递质释放至关重要.
- 分析FP数据往往是劳动密集型和耗时的,阻碍了研究进展.
研究的目的:
- 开发一个通用应用程序,纤维光度分析 (FiPhA),用于简化FP数据分析.
- 为了创建一个与各种FP方法相容的多功能管道,如光谱分辨率,基于摄像头和锁定解调.
主要方法:
- FiPhA是使用R Shiny框架开发的,确保了一个用户友好的界面.
- 该应用程序包含交互式可视化,质量控制和批处理功能.
- 它允许事件触发的平均处理和行为事件的过.
主要成果:
- FiPhA显著简化和加快了光纤光度数据的分析.
- 该应用程序提供交互式可视化和强大的质量控制措施.
- 批处理能力提高了大型数据集的效率.
结论:
- 在行为神经科学中,FiPhA为分析离散的基于事件的FP数据提供了一个有价值的,用户友好的解决方案.
- 它减少了对定制分析管道的需求,促进FP数据调查的标准化.
- 这种工具使研究人员能够有效地分析复杂的神经活动数据.
相关概念视频
Spectrophotometry: Introduction
8.5K
Spectrophotometry is the quantitative measurement of the absorption, reflection, diffraction, or transmission of electromagnetic radiation through a material as a function of the intensity and wavelength of the radiation. A spectrophotometer is a device used to measure the change in the radiation intensity caused by its interaction with the material.
The essential components of a spectrophotometer include a source of electromagnetic radiation, a slot for placing a material to be analyzed, and a...
The essential components of a spectrophotometer include a source of electromagnetic radiation, a slot for placing a material to be analyzed, and a...
8.5K
UV–Vis Spectrometers
4.1K
The absorbance of UV and visible (UV–visible) radiations is measured using a UV–visible spectrophotometer. Deuterium lamps, which emit UV radiation, and tungsten lamps, which produce radiation in the visible region, are used as light sources in UV–visible spectrophotometers. A monochromator or prism is used for diffraction grating, i.e., to split the incoming radiation into different wavelengths. A system of slits is used to focus the desired wavelength on the sample cell.
4.1K
UV–Vis Spectroscopy: Woodward–Fieser Rules
30.7K
UV–Visible absorption spectra of conjugated dienes arise from the lowest energy π → π* transitions. The light-absorbing part of the molecule is called the chromophore, and the substituents directly attached to the chromophore are called auxochromes. A strong correlation exists between the absorption maxima, λmax, and the structure of a conjugated π system. The Woodward–Fieser rules predict the value of λmax for a...
30.7K
Imaging Biological Samples with Optical Microscopy
9.2K
Optical microscopy uses optic principles to provide detailed images of samples. Antonie van Leeuwenhoek designed the first compound optical microscope in the 17th century to visualize blood cells, bacteria, and yeast cells. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes with enhanced magnification and resolution.
In optical microscopy, the specimen to be viewed is placed on a glass slide and clipped on the stage...
In optical microscopy, the specimen to be viewed is placed on a glass slide and clipped on the stage...
9.2K
Flame Photometry: Overview
2.1K
Flame photometry, also known as flame emission spectrometry, is a technique used for the qualitative and quantitative analysis of elements present in a sample using a flame as the source of excitation energy. The concept of flame photometry was realized in the early 1860s by Kirchhoff and Bunsen, who discovered that specific elements emit characteristic radiation when excited in flames. The first instrument developed for this purpose was used to measure sodium (Na) in plant ash using a Bunsen...
2.1K
Flame Photometry: Lab
1.3K
In a flame photometer, when a solution like potassium chloride is aspirated into the flame, the solvent evaporates, leaving behind dehydrated salt. This salt dissociates into free gaseous atoms in their ground state. Some of these atoms absorb energy from the flame, leading to their excitation. The excited atoms return to the ground state, emitting photons at characteristic wavelengths. Because only electronic transitions are involved, the resulting emission lines are very narrow. The intensity...
1.3K


