十亿年的进化在纳秒的蛋白质动态中表现出来
Philipp J Heckmeier1, Jeannette Ruf1, Charlotte Rochereau2
1Department of Chemistry, University of Zurich, Zurich 8057, Switzerland.
概括
进化会影响数百万年来蛋白质的动态. 这项研究揭示了保存的超快速蛋白质重排和与进化分歧相关的时间变化,为分子古生物学打开了大门.
科学领域:
- 生物物理学的生物物理.
- 分子生物学分子生物学
- 进化生物学 进化生物学
背景情况:
- 蛋白质动态对于功能至关重要,但它们对超快过程的进化影响尚不清楚.
- 在广的进化时间尺度上研究保存的蛋白质,为分子适应提供了洞察力.
- 超快速蛋白质动态 (纳秒级) 是理解结构-功能关系的关键.
研究的目的:
- 为了研究进化对纳秒级蛋白质动态的影响.
- 为了比较近10亿年的进化过程中保存的蛋白质的十个同类蛋白质的蛋白质动力学.
- 探索蛋白质动态作为进化分类指标的潜力.
主要方法:
- 利用短暂的红外光谱来探测蛋白质的动态.
- 在蛋白质结合口袋内诱导的光触发的连接体不稳定.
- 分析了十种蛋白质同类的动态足迹,与它们的连接体复合.
主要成果:
- 对于每个蛋白质同类物来说,已解决了不同的动态足迹.
- 确定了在狭窄的时间窗口内发生的蛋白质重排的保存级联.
- 在一个与进化分歧相关的动态过程中观察到微妙的时间转移,这表明选择放松了.
- 发现保存的超快速分子过程跨越数亿年的时间.
结论:
- 进化显著影响超快蛋白质的动态.
- 保存的动态过程为进化历史提供了一个分子时钟.
- 蛋白质动态为分子古生物学和物种分类提供了一种新的方法.
- 这项工作弥合了超快分子事件和深层进化时间之间的差距.
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