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相关概念视频

Protein Families02:47

Protein Families

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Protein families are groups of homologous proteins; that is, they have similarities in amino acid sequences and three-dimensional structures. Protein families usually occur because of gene duplication, where an additional copy of a gene is inserted into the genome of an organism.   Mutations that change the amino acids but still allow the protein to be properly synthesized, will lead to new protein family members.   If these new proteins contain similar amino acids in key...
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Peptide Identification Using Tandem Mass Spectrometry01:33

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Tandem mass spectrometry, also known as MS/MS or MS2, is an analytical technique that employs two mass analyzers. Essentially it is a series of mass spectrometers that helps isolate a particular biomolecule and then helps study its chemical properties.
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
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RNA-seq

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
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Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
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相关实验视频

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Single Cell Multiplex Reverse Transcription Polymerase Chain Reaction After Patch-clamp
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在多个蛋白质序列中找到相同的序列重复:一种算法.

Vikas Kumar Maurya1, Madhumathi Sanjeevi, Chandrasekar Narayanan Rahul

  • 1Department of Computational and Data Sciences, Indian Institute of Science, Bengaluru 560 012, India.

Journal of biosciences
|March 6, 2024
PubMed
概括

氨基酸重复与疾病和蛋白质进化有关. 一种新的方法,内部序列重复跨多个蛋白质序列 (ISRMPS),识别这些重复跨多个序列的各种应用.

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相关实验视频

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科学领域:

  • 生物化学和分子生物学
  • 生物信息学和计算生物学

背景情况:

  • 氨基酸重复与疾病病原和蛋白质结构演变有关.
  • 现有的重复分析算法在序列长度和查询数量方面存在局限性.

研究的目的:

  • 为了引入一种新方法,内部序列在多个蛋白质序列 (ISRMPS) 中重复,以识别相同和遥远的氨基酸重复.
  • 为了克服当前重复识别工具的局限性.

主要方法:

  • 开发ISRMPS算法,用于检测在多个蛋白质序列内和跨越多个蛋白质序列中的相同氨基酸重复.
  • 应用ISRMPS来识别遥远的重复模式.

主要成果:

  • ISRMPS成功地在多个蛋白质序列中识别了相同的重复.
  • 该方法能够检测遥远的重复模式.

结论:

  • ISRMPS提供了一个用于分析蛋白质中氨基酸重复的新工具.
  • 该方法在进化研究,表位图绘制和比较序列分析中具有潜在的应用.