Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Comparing Copy Number Variations and SNPs02:26

Comparing Copy Number Variations and SNPs

Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Sanger Sequencing01:57

Sanger Sequencing

DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
Next-generation Sequencing03:00

Next-generation Sequencing

The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
RNA-seq03:21

RNA-seq

RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while microarray-based...
Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Comparison of key diagnostics for probabilistic interpretation of STR mixture data generated with length-based and MPS methodologies.

Forensic science international. Genetics·2026
Same author

Enhancement of the Precision ID Mitochondrial DNA Whole Genome System for Challenging Unidentified Human Remains.

Genes·2025
Same author

Improving the Utilization of STRmix™ Variance Parameters as Semi-Quantitative Profile Modeling Metrics.

Genes·2023
Same author

Comparative study of Rapid DNA versus conventional methods on compromised bones.

Forensic science international. Genetics·2023
Same author

Compound and Conditioned Likelihood Ratio Behavior within a Probabilistic Genotyping Context.

Genes·2022
Same author

Modeling allelic analyte signals for aSTRs in NGS DNA profiles.

Journal of forensic sciences·2021

相关实验视频

Updated: Jul 20, 2026

Multiplex Detection of Bacteria in Complex Clinical and Environmental Samples using Oligonucleotide-coupled Fluorescent Microspheres
11:09

Multiplex Detection of Bacteria in Complex Clinical and Environmental Samples using Oligonucleotide-coupled Fluorescent Microspheres

Published on: October 23, 2011

16.3K

用负控对 ForenSeq Kintelligence 库进行多重复合的影响和考虑因素.

Gunmeet Kaur Bali1, Daniela Cuenca1, Jeanette Wallin1

  • 1California Department of Justice, Jan Bashinski DNA Laboratory, Richmond, California, USA.

Electrophoresis
|March 7, 2024
PubMed
概括

在每个法医大规模并行测序 (MPS) 运行中包括负控制,消耗了宝贵的测序空间,可能导致等位基因脱落,并在遗传谱系数据库中增加未知的关联.

科学领域:

  • 法医科学 法医科学 法医科学
  • 遗传学 遗传学 是一个
  • 分子生物学分子生物学

背景情况:

  • 负控制对于监测法医DNA分析中的污染至关重要.
  • 大规模并行测序 (MPS) 在法医实验室越来越多地被采用.
  • 目前的FBI质量保证标准要求在法医DNA分析中进行负控制.

研究的目的:

  • 通过使用ForenSeq Kintelligence Kit,评估在每个测序运行中包含负控制的必要性和影响.
  • 为了评估负控在后续序列运行中的实用性,在初始库准备后运行.

主要方法:

  • 研究了在每个 ForenSeq Kintelligence 测序运行中包含负放大控制的效果.
  • 量化了负控库所占的测序空间.
  • 在GEDmatch PRO中分析了对含DNA样本的影响,包括等位基因/位点脱落和未知的关联.

主要成果:

  • 负控制库占据了总测序运行输出的7% - 14%.
  • 在某些情况下,减少DNA样本的测序空间导致了等位基因或位点脱落.
  • 在GEDmatch PRO中观察到第六到第七次未知关联的情况增加.
关键词:
在GEDmatch PRO中使用GEDmatch.我们的情报是Kintelligence.亲属关系协会 亲属关系协会负控制是一种消极的控制.序列可以读取.

更多相关视频

Multiplexed Isothermal Amplification Based Diagnostic Platform to Detect Zika, Chikungunya, and Dengue 1
06:18

Multiplexed Isothermal Amplification Based Diagnostic Platform to Detect Zika, Chikungunya, and Dengue 1

Published on: March 13, 2018

14.3K
Multiplexed Analysis of Retinal Gene Expression and Chromatin Accessibility Using scRNA-Seq and scATAC-Seq
06:24

Multiplexed Analysis of Retinal Gene Expression and Chromatin Accessibility Using scRNA-Seq and scATAC-Seq

Published on: March 12, 2021

3.6K

相关实验视频

Last Updated: Jul 20, 2026

Multiplex Detection of Bacteria in Complex Clinical and Environmental Samples using Oligonucleotide-coupled Fluorescent Microspheres
11:09

Multiplex Detection of Bacteria in Complex Clinical and Environmental Samples using Oligonucleotide-coupled Fluorescent Microspheres

Published on: October 23, 2011

16.3K
Multiplexed Isothermal Amplification Based Diagnostic Platform to Detect Zika, Chikungunya, and Dengue 1
06:18

Multiplexed Isothermal Amplification Based Diagnostic Platform to Detect Zika, Chikungunya, and Dengue 1

Published on: March 13, 2018

14.3K
Multiplexed Analysis of Retinal Gene Expression and Chromatin Accessibility Using scRNA-Seq and scATAC-Seq
06:24

Multiplexed Analysis of Retinal Gene Expression and Chromatin Accessibility Using scRNA-Seq and scATAC-Seq

Published on: March 12, 2021

3.6K

结论:

  • 在ForenSeq Kintelligence Kit的每个测序运行中,在初始库准备后,常规包含负控并非必不可少.
  • 这种做法消耗了大量的测序资源,可能会损害对有价值的法医DNA样本的分析.
  • 优化负控制的使用可以提高法医遗传谱系中的MPS效率和数据质量.