使用AlphaFold 2进行替代拼接异型的蛋白质结构特征的系统表征
bioRxiv : the preprint server for biology
|March 11, 2024
概括
替代拼接改变了蛋白质结构,特别是在线圈和β片中. 这项研究使用AlphaFold 2分析了3000个人类基因,揭示了蛋白质结构变化和疾病联系的洞察力.
科学领域:
- 分子生物学分子生物学
- 结构生物学 结构生物学
- 生物信息学是一种生物信息学.
背景情况:
- 替代拼接从单个基因产生蛋白质多样性.
- 有限的蛋白质结构数据阻碍了对替代拼接结构影响的理解.
研究的目的:
- 分析人类蛋白质中替代拼接的结构后果.
- 利用AlphaFold 2进行替代拼接区域的综合结构预测.
主要方法:
- 使用AlphaFold 2进行蛋白质结构预测.
- 分析了大约3000个人类基因的替代拼接事件.
- 采用高性能计算来描述结构特征.
主要成果:
- 替代拼接主要影响线圈和β片中的残留物.
- 交替拼接的区域显示循环的丰富和暴露的残留物.
- 确定了Sept-9循环,Tau突变和阿尔茨海默病之间的潜在联系.
结论:
- 替代拼接显著影响蛋白质结构,特别是在特定的二次结构和表面暴露区域.
- 来自替代拼接的结构洞察力为蛋白质进化和阿尔茨海默氏症等人类疾病提供了潜在的联系.
更多相关视频
相关概念视频
Alternative RNA Splicing
21.1K
Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
21.1K
RNA Splicing
56.3K
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
56.3K
Protein Folding
8.0K
Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
8.0K
Protein and Protein Structure
79.5K
Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme...
A protein's shape is critical to its function. For example, an enzyme...
79.5K
Conservation of Protein Domains Over Different Proteins
10.9K
Protein domains are small structurally independent units that are part of a single amino acid chain. Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
10.9K
Chromatin Structure and RNA Splicing
2.7K
2.7K


