一个尖端可以在最小的细胞和单个异构体中实现全面的蛋白质覆盖
Zilu Ye1,2, Pierre Sabatier3,4, Javier Martin-Gonzalez5
1State Key Laboratory of Common Mechanism Research for Major Diseases, Suzhou Institute of Systems Medicine, Chinese Academy of Medical Sciences & Peking Union Medical College, Suzhou, China. yzl@ism.pumc.edu.cn.
Nature communications
|March 20, 2024
概括
一提示是一种新的蛋白质组学方法,简化了用于可复制蛋白质识别的样本准备. 这种高效的工作流提高了从细胞到细胞外囊泡的各种样本类型的蛋白质组分析.
科学领域:
- 蛋白质组学是指蛋白质组学
- 质谱测量质量谱测量
- 生物化学 生物化学
背景情况:
- 基于质谱 (MS) 的蛋白质组学工作流程是复杂的,多步骤的过程.
- 这些工作流程面临的挑战包括样本丢失,可重复性问题,高成本和所需的专业知识.
研究的目的:
- 为了介绍One-Tip,一种新的蛋白质组学方法.
- 为了简化样本准备和增强数据独立获取 (DIA) 分析.
- 为了证明One-Tip在各种样本类型中的广泛适用性.
主要方法:
- 整合单样本准备与狭窄窗口数据独立获取 (nDIA).
- 使用Uno单细胞分剂器TM进行单细胞蛋白质组学.
- 将工作流应用于来自血的HeLa细胞,单个小鼠胚胎细胞和细胞外囊泡 (EVs).
主要成果:
- 来自1000个HeLa细胞的>9000个蛋白质的可重复识别.
- 从早期小鼠胚胎中单细胞中识别了约6000种蛋白质.
- 使用单细胞蛋白组学识别每个HeLa细胞的>3000种蛋白质.
- 从血中鉴定出>3000个来自16 ng的EVs的蛋白质.
结论:
- 一个提示显著简化了蛋白质组学样本处理.
- 该方法允许在各种生物样本中进行高深度和可重复的蛋白质识别.
- 一提示扩展了蛋白质组学在深度,吞吐量和样本多功能性方面的能力.
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