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相关概念视频

Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

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Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
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Genome Annotation and Assembly03:36

Genome Annotation and Assembly

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The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
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Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes02:16

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The present-day mitochondrial and chloroplast genomes have retained some of the characteristics of their ancestral prokaryotes and also have acquired new attributes during their evolution within eukaryotic cells. Like prokaryotic genomes, mitochondrial and chloroplast genomes neither bind with histone-like proteins nor show complex packaging into chromosome-like structures, as observed in eukaryotes. Unlike mitotic cell divisions observed in eukaryotic cells, mitochondria and chloroplasts...
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Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
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Gene Evolution - Fast or Slow?

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The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
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An Integrated Approach for Microprotein Identification and Sequence Analysis
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DiGAlign:用于比较基因组学的序列对齐的多功能和交互可视化.

Yosuke Nishimura1, Kohei Yamada2, Yusuke Okazaki2

  • 1Research Center for Bioscience and Nanoscience (CeBN), Research Institute for Marine Resources Utilization (MRU), Japan Agency for Marine-Earth Science and Technology (JAMSTEC).

Microbes and environments
|March 20, 2024
PubMed
概括
此摘要是机器生成的。

DiGAlign 是一个用于比较基因组学的新网络服务器. 它提供微生物和病毒基因组序列的可定制可视化,有助于生态和进化研究.

关键词:
对齐可视化对齐可视化生物信息学工具 生物信息学工具进行比较的基因组学.合成地图 合成地图网络服务器是Web服务器.

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科学领域:

  • 基因组学就是基因组学.
  • 微生物生态学 微生物生态学
  • 进化生物学 进化生物学

背景情况:

  • 越来越多的基因组数据需要先进的工具进行比较分析.
  • 对比基因组学对于理解微生物生态学和进化至关重要.

研究的目的:

  • 介绍DiGAlign,一个用户友好的网络服务器,用于多功能比较基因组学.
  • 为了使微生物和病毒的基因组合成图可定制可视化.

主要方法:

  • 开发一个具有直观界面的Web服务器.
  • 实现上传和分析核酸序列 (整个基因组或特定区域) 的功能.
  • 可以自定义的synteny地图的可视化.

主要成果:

  • DiGAlign提供了多功能性的比较基因组学功能.
  • 用户可以生成高度可定制的synteny地图可视化.
  • 该工具支持从特定的基因组区域到整个基因组的分析.

结论:

  • DiGAlign促进了基因组序列的快速表征.
  • 它是生物学研究人员,特别是实验生物学家的宝贵资源.
  • 能够为比较基因组学研究生成准备出版的数据.