在整个考拉群体内,对比内源逆转录病毒之间的分离模式
Mette Lillie1,2, Mats Pettersson3, Patric Jern4
1Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23, Uppsala, Sweden. Mette.Lillie@ebc.uu.se.
Communications biology
|March 22, 2024
概括
考拉有大量的内源逆转录病毒 (ERV),包括最近的法-β血统. 地理模式显示出不同的ERV分布,为保护这个临灭绝的有袋动物提供了有价值的遗传标记.
科学领域:
- 基因组学就是基因组学.
- 病毒学 病毒学
- 保护遗传学 保护遗传学
背景情况:
- 考拉 (Phascolarctos cinereus) 拥有作为内源逆转录病毒 (ERV) 的过去逆转录病毒流行病的基因组记录.
- 一个特定的血统,phaCin-β,在考拉种群中表现出近期或正在进行的活动,具有显著的插入多态性.
研究的目的:
- 在考拉中调查三个不同的ERV系 (KoRV,法-β和法-β类) 的地理分布.
- 分析不同考拉种群中这些ERV的插入多态和频率模式.
主要方法:
- 来自考拉基因组调查的430只考拉的全基因组测序.
- 在考拉种群中识别和分析数千个ERV位置.
- 北方和南方考拉种群之间的ERV模式的比较.
主要成果:
- 数以千计的ERV位点被确定,其多态性有显著的变化.
- 北方考拉表现出众多的KORV和法-β集成.
- 南部考拉表现出更高的法-β频率,这表明最近的活动和潜在的创始人效应.
结论:
- 考拉表现出相当大的ERV负担,反映出长期以来的复原病毒与宿主相互作用的历史.
- 已识别的ERV目录提供了对危考拉的保护至关重要的新型遗传标记.
相关概念视频
Retroviruses
12.3K
Retroviruses and retrotransposons both insert copies of their genetic elements into the genome of the host cell. Thus, the viral genes are passed on when the host genome is replicated or translated. A typical retroviral DNA sequence contains 3-4 genes that encode the different proteins required for its structural assembly and function as a molecular parasite. This DNA is transcribed into a single mRNA, which is very similar in structure to conventional mRNAs, i.e., it is capped at the 5’...
12.3K
Non-LTR Retrotransposons
11.5K
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
11.5K
LTR Retrotransposons
17.5K
LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
17.5K
Retrovirus Life Cycles
45.9K
Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
45.9K
Viral Recombination
23.4K
Cells are sometimes infected by more than one virus at once. When two viruses disassemble to expose their genomes for replication in the same cell, similar regions of their genomes can pair together and exchange sequences in a process called recombination. Alternatively, viruses with segmented genomes can swap segments in a process called reassortment.
23.4K
Mechanisms of Retrovirus-induced Cancers
5.1K
Retroviruses are RNA viruses that have been shown to cause cancers in diverse species, including chickens, mice, cats, and monkeys. The RNA genomes of these viruses are first reverse-transcribed into single and then double-stranded DNA (dsDNA) copies. This dsDNA called proviral DNA then integrates into the host genome. Subsequently, the host cell transcribes the proviral DNA in concert with the chromosomal DNA. This leads to the production of viral RNA and proteins that assemble at the host...
5.1K


