在斑马鱼的三个关键机体生成阶段对长非编码RNA的系统识别
Chune Zhou1, Mengting Li1, Yaoyi Sun1
1Henan International Joint Laboratory of Aquatic Ecotoxicology and Health Protection, College of Life Sciences, Henan Normal University, Xinxiang 453007, China.
International journal of molecular sciences
|March 28, 2024
概括
这项研究确定了长非编码RNA gas5 (lncRNA gas5) 对于斑马鱼胚胎肌肉发育至关重要. 淘汰 lncRNA gas5 干扰了骨肌肉的形成,强调了它在器官生成中的作用.
科学领域:
- 发展生物学 发展生物学
- 基因组学就是基因组学.
- 分子生物学分子生物学
背景情况:
- 长非编码RNAs (lncRNAs) 在胚胎发生过程中起着至关重要的作用,但它们在斑马鱼器官发生过程中的功能,特别是肌肉发育,仍然在很大程度上没有特征.
- 了解lncRNA参与对于破译复杂的发育过程至关重要.
研究的目的:
- 识别和描述参与斑马鱼胚胎肌肉发育的lncRNAs.
- 为了研究 lncRNA gas5 在斑马鱼骨肌肉器官生成中的特定作用.
主要方法:
- 高通量测序用于在斑马鱼胚胎中在三个关键的器官生成阶段 (10,24和36小时的受精后) 描述lncRNA表达.
- 量化PCR (qPCR) 和现场杂交用于lncRNA验证和时空表达分析.
- 用CRISPR/Cas9基因编辑技术将IncRNA gas5用于功能分析.
主要成果:
- 数以千计的差异表达的lncRNAs在发育阶段被确定,IncRNA gas5被选为关键目标.
- lncRNA gas5在斑马鱼胚胎和成人的组织中表现出广泛的时空表达.
- 通过CRISPR/Cas9介导的lncRNA gas5的淘汰显著影响了与肌肉发育相关的基因的表达,并改变了骨肌生成标志物myod.的表达.
结论:
- lncRNA gas5在斑马鱼胚胎骨肌肉发育中起着重要作用.
- 这些发现为进一步研究 lncRNA gas5 调节肌肉发生的具体机制提供了基础.
相关概念视频
RNA Splicing
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
RNA Splicing
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
Nonsense-mediated mRNA Decay
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Leaky Scanning
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...
RNA-seq
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases.
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while microarray-based...
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while microarray-based...
Ribosome Profiling
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...


