埃克塞尔酶:瑞士大学与行业合作,加速生物催化剂开发
Sumire Honda Malca1, Peter Stockinger2, Nadine Duss3
1Competence Center for Biocatalysis, Institute of Chemistry and Biotechnology, Zurich University of Applied Sciences, Einsiedlerstrasse 31, CH-8820 Wädenswil, Switzerland. hond@zhaw.ch.
Chimia
|March 28, 2024
概括
埃克塞尔zyme通过自动化和机器学习加速生物催化剂的开发,用于工业应用. 这种酶工程平台通过蛋白质支架选择和库建设来增强多样性.
科学领域:
- 生物催化和酶工程 生物催化和酶工程
- 工业应用中的蛋白质工程.
- 生物技术中的计算生物学和机器学习.
背景情况:
- 工业生物催化剂需要高效和量身定制的酶.
- 传统的酶开发可能是耗时和资源密集的.
- 该Excelzyme平台旨在简化生物催化剂的产生.
研究的目的:
- 描述Excelzyme平台使用的工作流程和技术.
- 展示酶工程在工业需求中的应用.
- 证明自动化和计算方法在生物催化剂开发中的有效性.
主要方法:
- 系统地选择蛋白质支架,用于构建酶库.
- 利用自动化和机器学习用于快速酶工程.
- 开发具有增强序列和结构性质的多种酶库.
主要成果:
- 通过应用工作流程成功生成定制的生物催化剂.
- 演示加速酶发育时间表.
- 通过工业案例研究验证平台的有效性.
结论:
- 该Excelzyme平台有效地加速了工业生物催化剂的发展.
- 自动化和机器学习是有效的酶工程的关键推动因素.
- 描述的工作流提供了一个强大的方法来创建多样化和量身定制的酶库.
更多相关视频
相关概念视频
Enzyme Kinetics
Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
Enzymes
Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
Catalytically Perfect Enzymes
The theory of catalytically perfect enzymes was first proposed by W.J. Albery and J. R. Knowles in 1976. These enzymes catalyze biochemical reactions at high-speed. Their catalytic efficiency values range from 108-109 M-1s-1. These enzymes are also called 'diffusion-controlled' as the only rate-limiting step in the catalysis is that of the substrate diffusion into the active site. Examples include triose phosphate isomerase, fumarase, and superoxide dismutase.
Heterogeneous Catalysis
Heterogeneous catalysis involves a catalyst in a different phase from the reactants. It is a process where the catalyst and the reactants are in distinct phases, typically solid and gas or liquid.Most heterogeneous catalysts are metals, metal oxides, or acids. The list includes transition metals like iron (Fe), cobalt (Co), nickel (Ni), palladium (Pd), platinum (Pt), chromium (Cr), manganese (Mn), tungsten (W), silver (Ag), and copper (Cu). These metals possess partially vacant d orbitals that...
Upstream Processing
Upstream processing represents a critical phase in biomanufacturing, wherein biological systems such as microorganisms, mammalian cells, or insect cells are cultivated to produce therapeutic proteins, vaccines, enzymes, or other biologically derived products. This phase encompasses all steps from the selection and genetic manipulation of the production organism to the cultivation of cells in bioreactors under tightly controlled environmental conditions.Host Selection and Genetic OptimizationThe...
Production of Pharmaceuticals
Industrial insulin production uses genetically engineered E. coli expressing a proinsulin gene controlled by a tryptophan promoter and containing a methionine linker for later cleavage. The cells also carry ampicillin resistance for selective growth. Seed cultures are stored at −80 °C and production begins by thawing a small amount to inoculate starter cultures, which are progressively scaled to a 50,000-L bioreactor. In the bioreactor, E. coli grow in nutrient-rich media under sterile, tightly...


