一个两步的贝叶斯网络方法来识别关键的SNP与四个纯种产母母线的多个表型特征相关的
Ismalia Bouba1,2, Emiliano A Videla Rodriguez3, V Anne Smith3
1Hendrix Genetics Research Technology & Services B.v, Hendrix Genetics, Boxmeer, North Brabant, The Netherlands.
PloS one
|March 28, 2024
概括
研究人员使用贝叶斯网络方法确定了28个单核酸多态 (SNP) 与产母养殖成功相关. 这些遗传标记可以改善的生存能力和福利.
科学领域:
- 动物遗传学动物遗传学
- 禽畜科学 禽畜科学 禽畜科学
- 生物信息学是一种生物信息学.
背景情况:
- 纯种产卵母的小经历了17周的关键养殖期,然后转移到产卵场.
- 养殖异常可能导致小被移除,影响群体的生产力和福利.
- 了解影响养殖成功的遗传因素对于优化家禽生产至关重要.
研究的目的:
- 调查单核酸多态 (SNPs) 和在白色雷戈恩层线中成功繁殖之间的关联.
- 使用贝叶斯网络 (BN) 方法来分析复杂的遗传和表型数据.
- 识别与死亡率,异常和整体养殖成功等特征相关的特定SNP.
主要方法:
- 采用两步贝叶斯网络 (BN) 方法,分析了来自23000个养殖批次的表型和SNP数据.
- 在四个纯种白色莱戈恩犬系中,研究了化特征,养殖特征和SNP之间的关联.
- 鉴定到的SNP与基因相关,并使用生物信息数据库进行了探索.
主要成果:
- 国家统计局的分析确定了28个与各种养殖特征相关的重要SNP.
- 十个SNP与离合体大小有关,10个与育儿异常有关,1个与自然死亡有关,7个与第一周死亡有关.
- 一个SNP (ENAH) 与CDC42蛋白连接在一起,该蛋白因其在卵子生产和繁殖中的作用而闻名.
结论:
- 贝叶斯网络是复杂生物系统 (如家禽遗传学) 中知识发现的强大工具.
- 已确定的SNP为基因选择提供了潜在的潜力,以提高产母的福利和生产效率.
- 选择这些SNP可以减少压力,并在关键的养殖阶段提高生活能力.
相关概念视频
Epistasis Analysis
5.0K
Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
5.0K
Genome-wide Association Studies-GWAS
13.4K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
13.4K
Epistasis
46.7K
In addition to multiple alleles at the same locus influencing traits, numerous genes or alleles at different locations may interact and influence phenotypes in a phenomenon called epistasis. For example, rabbit fur can be black or brown depending on whether the animal is homozygous dominant or heterozygous at a TYRP1 locus. However, if the rabbit is also homozygous recessive at a locus on the tyrosinase gene (TYR), it will have an unshaded coat that appears white, regardless of its TYRP1...
46.7K
Punnett Squares
114.4K
Overview
114.4K
Trihybrid Crosses
23.3K
Trihybrid Crosses
Some of Mendel’s crosses examined three pairs of contrasting characteristics. Such a cross is called a trihybrid cross. A trihybrid cross is a combination of three individual monohybrid crosses. For example, plant height (tall vs. short), seed shape (round vs. wrinkled), and seed color (yellow vs. green).
The F1 generation plants of a trihybrid cross are heterozygous for all three traits and produce eight gametes. Upon self-fertilization, these gametes have an equal...
Some of Mendel’s crosses examined three pairs of contrasting characteristics. Such a cross is called a trihybrid cross. A trihybrid cross is a combination of three individual monohybrid crosses. For example, plant height (tall vs. short), seed shape (round vs. wrinkled), and seed color (yellow vs. green).
The F1 generation plants of a trihybrid cross are heterozygous for all three traits and produce eight gametes. Upon self-fertilization, these gametes have an equal...
23.3K
Polygenic Traits
65.8K
When more than one gene is responsible for a given phenotype, the trait is considered polygenic. Human height is a polygenic trait. Studies have uncovered hundreds of loci that influence height, and there are believed to be many more. Due to the high number of genes involved, as well as environmental and nutritional factors, height varies significantly within a given population. The distribution of height forms a bell-shaped curve, with relatively few individuals in the population at the...
65.8K


