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Combinatorial Gene Control02:33

Combinatorial Gene Control

8.3K
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
8.3K
Co-activators and Co-repressors02:04

Co-activators and Co-repressors

7.3K
Gene transcription is regulated by the synergistic action of several proteins that form a complex at a gene regulatory site. This is observed in eukaryotes, where the regulation of gene expression is a complex process. Regulatory proteins in eukaryotes can broadly be classified into two types – regulators that bind directly to specific DNA sequences and co-regulators that associate with regulatory proteins but cannot directly bind to the DNA. These co-regulators are further divided into...
7.3K
Cooperative Binding of Transcription Regulators02:13

Cooperative Binding of Transcription Regulators

6.4K
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome.  Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
6.4K
Ribosome Profiling02:24

Ribosome Profiling

3.5K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.5K
General Transcription Factors01:30

General Transcription Factors

5.3K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
5.3K
Master Transcription Regulators02:23

Master Transcription Regulators

6.9K
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
6.9K

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相关实验视频

Updated: Jun 29, 2025

A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations
09:34

A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations

Published on: October 25, 2018

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识别可复制的转录调节器同表达模式与单细胞转录组学.

Alexander Morin1,2,3, C Pan Chu1,2,3, Paul Pavlidis1,2

  • 1Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.

bioRxiv : the preprint server for biology
|April 1, 2024
PubMed
概括
此摘要是机器生成的。

这项研究利用单细胞RNA测序数据绘制了与人类和小鼠转录调节器 (TRs) 的基因表达协调图. 结果揭示了可复制的协同表达模式,有助于识别跨物种的基因调节相互作用.

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Reusable Single Cell for Iterative Epigenomic Analyses
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Reusable Single Cell for Iterative Epigenomic Analyses

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Transcriptome Analysis of Single Cells
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Transcriptome Analysis of Single Cells

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相关实验视频

Last Updated: Jun 29, 2025

A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations
09:34

A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations

Published on: October 25, 2018

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Reusable Single Cell for Iterative Epigenomic Analyses
10:28

Reusable Single Cell for Iterative Epigenomic Analyses

Published on: February 11, 2022

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Transcriptome Analysis of Single Cells
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Transcriptome Analysis of Single Cells

Published on: April 25, 2011

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科学领域:

  • 基因组学就是基因组学.
  • 计算生物学 计算生物学
  • 分子生物学分子生物学

背景情况:

  • 单细胞转录组学能够详细研究基因转录调节.
  • 了解转录调节器 (TR) 基因合作伙伴对于破译细胞过程至关重要.

研究的目的:

  • 识别与人类和小鼠转录调节器 (TRs) 共同表达的基因伴侣在各种生物环境中.
  • 评估TR同表达特征在物种内部和物种之间的一致性和可重现性.

主要方法:

  • 组装了120个人类和103个小鼠单细胞RNA测序数据集 (>2800万个细胞).
  • 构建了人类和小鼠TRs的单细胞同表达网络.
  • 在细胞类型和物种中优先重复可重复的共同表达模式.
  • 集成的协同表达数据与ChIP-seq信息,以确定候选的监管相互作用.

主要成果:

  • 开发了每个TR的单细胞同表达排名,恢复已知的目标.
  • 证明了聚合的共同表达数据在识别TR目标方面与ChIP-seq相竞争.
  • 通过跨物种的联合表达和ChIP-seq数据支持的确定了候选调节相互作用.
  • 为神经TR ASCL1.1突出显示的相互作用.

结论:

  • 聚合的单细胞联合表达网络提供了一种强大的方法来识别TR基因合作伙伴.
  • 对同表达模式的跨物种分析提高了已识别的调节相互作用的可靠性.
  • 汇编的信息为研究界提供了有价值的资源,ASCL1互动就是一个很好的例子.