Canopy2:通过批量DNA和单细胞RNA测序来推断瘤原型
Ann Marie K Weideman1, Rujin Wang1, Joseph G Ibrahim1,2
1Department of Biostatistics, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
bioRxiv : the preprint server for biology
|April 2, 2024
概括
贝叶斯框架Canopy2使用DNA和单细胞RNA测序来重建瘤细胞的进化. 它准确地描述突变,并识别数据变异的来源,改善癌症治疗见解.
科学领域:
- 基因组学就是基因组学.
- 计算生物学 计算生物学
- 癌症研究 癌症研究
背景情况:
- 瘤异质性,来自不同的细胞群,驱动药物耐药性和治疗失败.
- 通过家族遗传树了解瘤细胞进化对于开发有效的癌症疗法至关重要.
- 现有的方法与单细胞数据的复杂性和稀疏性作斗争,以准确的瘤亚种群概况.
结论:
- Canopy2提供了一个强大的计算框架,用于分析瘤进化动态.
- 精确的亚种群概况提升了对癌症异质性和耐药性的理解.
- 该工具有助于制定更有针对性和有效的癌症治疗策略.
相关概念视频
Evolutionary Relationships through Genome Comparisons
5.7K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.7K
Tumor Progression
6.3K
Tumor progression is a phenomenon where the pre-formed tumor acquires successive mutations to become clinically more aggressive and malignant. In the 1950s, Foulds first described the stepwise progression of cancer cells through successive stages.
Colon cancer is one of the best-documented examples of tumor progression. Early mutation in the APC gene in colon cells causes a small growth on the colon wall called a polyp. With time, this polyp grows into a benign, pre-cancerous tumor. Further...
Colon cancer is one of the best-documented examples of tumor progression. Early mutation in the APC gene in colon cells causes a small growth on the colon wall called a polyp. With time, this polyp grows into a benign, pre-cancerous tumor. Further...
6.3K


