种群基因组学突出了羊毛葡萄葡萄在盐沿海环境的局部适应的结构变化
Tianhao Zhang1,2,3,4, Wenjing Peng1,2,5, Hua Xiao1
1National Key Laboratory of Tropical Crop Breeding, Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518000, China.
Journal of integrative plant biology
|April 5, 2024
概括
结构变异 (SVs) 显著影响植物的适应. 这项研究揭示了SV和SNP驱动羊毛葡萄种群的局部适应,确定了盐耐受性和气候适应性的关键基因.
科学领域:
- 植物基因组学 植物基因组学
- 进化生物学是进化的生物学.
- 人口遗传学 人口遗传学
背景情况:
- 植物基因组中的结构变异 (SV) 尽管在适应中发挥着重要作用,但仍未得到充分研究.
- 羊毛葡萄 (Vitis retordii) 作为研究 SVs 适应不同环境的模型.
研究的目的:
- 为了研究 SVs对羊毛葡萄种群的局部适应的影响.
- 识别受SV和单核酸多态 (SNP) 影响的基因和基因组区域.
主要方法:
- 为Vitis retordii.组建一个哈普洛型解析的染色体参考基因组.
- 使用沿海和内陆人口的全基因组测序 (WGS) 数据进行人口遗传分析.
- 人口分析以推断人口历史和基因流动.
主要成果:
- 确定了1035个与沿海人口适应盐应激,辐射和环境相关的基因.
- 在37.29%的适应基因中检测到与SV相关的选择,而SNP占65.26%.
- 与盐耐受性相关的候选基因 (FSD2,RGA1,AAP8) 在SV区域显示出高差异化.
结论:
- 在植物的局部适应中,SVs起着至关重要的作用.
- 已识别的候选基因为葡萄品种育种计划提供了宝贵的基因组资源,特别是用于盐和气候适应.
- 强调在植物基因组进化和育种中考虑SV的重要性.
相关概念视频
Responses to Salt Stress
13.1K
Salt stress—which can be triggered by high salt concentrations in a plant’s environment—can significantly affect plant growth and crop production by influencing photosynthesis and the absorption of water and nutrients.
13.1K
What is Population Genetics?
57.9K
A population is composed of members of the same species that simultaneously live and interact in the same area. When individuals in a population breed, they pass down their genes to their offspring. Many of these genes are polymorphic, meaning that they occur in multiple variants. Such variations of a gene are referred to as alleles. The collective set of all the alleles within a population is known as the gene pool.
57.9K
Conservation of Small Populations
13.1K
Small population sizes put a species at extreme risk of extinction due to a lack of variation, and a consequent decrease in adaptability. This weakens the chances of survival under pressures such as climate change, competition from other species, or new diseases. Large populations are more likely to survive pressures such as these, as such populations are more likely to harbor individuals that have genetic variants that are adaptive under new stresses. Small populations are much less...
13.1K
Genetic Drift
39.7K
Natural selection—probably the most well-known evolutionary mechanism—increases the prevalence of traits that enhance survival and reproduction. However, evolution does not merely propagate favorable traits, nor does it always benefit populations.
39.7K
Gene Evolution - Fast or Slow?
7.1K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
7.1K
Gene Flow
35.1K
Gene flow is the transfer of genes among populations, resulting from either the dispersal of gametes or from the migration of individuals.
35.1K


