由内源逆转录病毒编码的口腔蛋白是斑马鱼发育所需的
Ni-Chen Chang1, Jonathan N Wells1, Andrew Y Wang1
1Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA.
bioRxiv : the preprint server for biology
|April 8, 2024
概括
斑马鱼中最近活跃的可转移元素 (TE) 编码为胚胎发育必需的蛋白质. 这些活跃的TE,如BHIKHARI-1 Gag,对于中皮和神经发展至关重要.
科学领域:
- 基因组学就是基因组学.
- 发展生物学 发展生物学
- 分子生物学分子生物学
背景情况:
- 可转移元素 (TE) 构成了真核生物基因组的很大一部分.
- 虽然许多TE是不活跃的,但一些古老的TE衍生的序列被重新用于宿主功能.
- 由于研究重复序列的挑战,人们对*活动*TE在有益功能中的作用,特别是发育过程中,了解得很少.
研究的目的:
- 研究最近活跃的可移植元素在胚胎发育中的功能作用.
- 为了确定活性TEs是否编码对生物体发育至关重要的蛋白质.
- 阐明积极的TE可能被整合到发展过程中的机制.
主要方法:
- 使用斑马鱼作为模型生物来研究活性可转移元素.
- 进行了淘汰和救援实验,以评估特定的TE编码蛋白的功能.
- 研究了胚胎中TE衍生的蛋白质的细胞局部化和子宫外表达的影响.
主要成果:
- 证明内源逆转录病毒家族BHIKHARI-1 (Bik-1) 编码了一种对斑马鱼中皮发育至关重要的Gag蛋白.
- 表明Bik-1 Gag与细胞膜结合,并在异位表达时影响细胞迁移.
- 发现BHIKHARI-2 Gag的耗尽导致斑马鱼神经发育缺陷.
结论:
- 斑马鱼中最近活跃的可转移元素编码了对胚胎发育至关重要的功能蛋白质.
- BHIKHARI-1和BHIKHARI-2口腔蛋白分别在中皮和神经的发育中发挥着关键作用.
- 提出了一个"成"模型来解释活跃的TE融入保存的发育途径.
相关概念视频
The Central Dogma
Overview
Retrovirus Life Cycles
Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the retrovirus to...
From DNA to Protein
The flow of genetic information in cells from DNA to mRNA to protein is described by the central dogma, which states that genes specify the sequence of mRNAs, which in turn specify the sequence of amino acids making up all proteins. The decoding of one molecule to another is performed by specific proteins and RNAs. Because the information stored in DNA is so central to cellular function, it makes intuitive sense that the cell would make mRNA copies of this information for protein synthesis...
Leaky Scanning
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...
Exon Recombination
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Exon shuffling follows “splice frame rules.” Each exon has three reading...
The Central Dogma
The central dogma explains the flow of genetic information from DNA nucleotides to the amino acid sequence of proteins.
RNA is the Missing Link Between DNA and Proteins
In the early 1900s, scientists discovered that DNA stores all the information needed for cellular functions and that proteins perform most of these functions. However, the mechanisms of converting genetic information into functional proteins remained unknown for many years. Initially, it was believed that a single gene is...
RNA is the Missing Link Between DNA and Proteins
In the early 1900s, scientists discovered that DNA stores all the information needed for cellular functions and that proteins perform most of these functions. However, the mechanisms of converting genetic information into functional proteins remained unknown for many years. Initially, it was believed that a single gene is...


