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相关概念视频

Ligand Binding Sites02:40

Ligand Binding Sites

12.8K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
12.8K
Ions as Acids and Bases02:54

Ions as Acids and Bases

23.7K
Salts with Acidic Ions
Salts are ionic compounds composed of cations and anions, either of which may be capable of undergoing an acid or base ionization reaction with water. Aqueous salt solutions, therefore, may be acidic, basic, or neutral, depending on the relative acid-base strengths of the salt’s constituent ions. For example, dissolving the ammonium chloride in water results in its dissociation, as described by the equation:
23.7K
Drug-Receptor Bonds01:25

Drug-Receptor Bonds

2.8K
Drug-receptor bonds are formed through various chemical forces when drugs interact with target cells. Covalent bonds, strong and irreversible, are exemplified by DNA-alkylating anticancer agents that inhibit cell division. However, such irreversible drug binding lacks selectivity and can modify the DNA of the surrounding healthy cells. Covalent binding often contributes to tissue toxicity, as seen with chloroform and paracetamol metabolites binding to the liver, causing hepatotoxicity.
In...
2.8K
The Equilibrium Binding Constant and Binding Strength02:18

The Equilibrium Binding Constant and Binding Strength

12.9K
The equilibrium binding constant (Kb) quantifies the strength of a protein-ligand interaction. Kb can be calculated as follows when the reaction is at equilibrium:
12.9K
Pore Transport and Ion-Pair Transport01:17

Pore Transport and Ion-Pair Transport

436
Pore transport and ion-pair formation are critical mechanisms for the absorption and distribution of drugs in the body.
Pore transport, also known as convective transport, is a process where small molecules like urea, water, and sugars rapidly cross cell membranes as though there were channels or pores in the membrane. Although direct microscopic evidence is limited  but the concept of pores or channels is widely accepted based on physiological evidence. Despite the lack of direct...
436
Factors Affecting Protein-Drug Binding: Drug-Related Factors01:18

Factors Affecting Protein-Drug Binding: Drug-Related Factors

99
Drug binding to proteins is a complex phenomenon influenced by various drug-related factors, each playing a significant role in the interaction between drugs and proteins within the body.
One crucial factor in drug-protein binding is the drug's lipophilicity or its affinity for fat. More lipophilic drugs tend to have higher binding extents. For example, highly lipophilic drugs like cloxacillin exhibit substantial protein binding, with as much as 95% of the drug binding to proteins. In...
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相关实验视频

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Peptide-based Identification of Functional Motifs and their Binding Partners
14:28

Peptide-based Identification of Functional Motifs and their Binding Partners

Published on: June 30, 2013

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评估弱离子对小的结合.

Corinne L D Gibb1, Thien H Tran1, Bruce C Gibb1

  • 1Department of Chemistry, Tulane University School of Science and Engineering, New Orleans, Louisiana 70118, United States.

The journal of physical chemistry. B
|April 9, 2024
PubMed
概括

核磁共振 (NMR) 光谱学可以通过分析N-H信号转移来量化弱离子与的结合. 这种方法揭示了阴离子主要与非极性区相互作用,而不是胺组,为霍夫迈斯特效应提供了洞察力.

科学领域:

  • 生物化学 生物化学
  • 化学物理 化学物理
  • 频谱学是一种光谱学.

背景情况:

  • 霍夫迈斯特效应描述了盐如何通过水盐和直接盐蛋白相互作用影响蛋白质特性.
  • 直接的盐蛋白相互作用是弱的,难以量化,通常被认为是不特定的.
  • 了解这些相互作用对于控制各种应用中的蛋白质行为至关重要.

研究的目的:

  • 为了证明1HNMR光谱学的有用性,以评估与酸结合的弱阴离子.
  • 使用N-H信号转移量化离子结合亲和力.
  • 为了阐明离子-相互作用的结合机制和位置.

主要方法:

  • 利用五作为模型系统.
  • 采用核磁共振 (NMR) 光谱的H维度来测量N-H信号转移.
  • 分析了由阴离子协会和点突变引起的转移.
  • 进行分子动力学 (MD) 模拟以支持实验发现.

主要成果:

  • 观察到显著的上方N-H信号在离子联结时发生转移,表明结合.
  • 证明这些变化比离子强度效应的变化要大.
  • 发现阴离子结合较弱,阴离子主要与非极性区结合.

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Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
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A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes
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A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes

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Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
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Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides

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  • MD模拟证实了与非极地区域相比,胺组的优先相互作用.
  • 结论:

    • 1H NMR光谱是一种强大的工具,用于量化低亲和度离子与的结合.
    • 阳离子与的结合主要是由与非极地区域的相互作用驱动的.
    • 这些发现为研究更复杂的生物系统中的离子结合和理解霍夫迈斯特效应提供了基准.