研究RNA支架对不同细菌物种多色化阿普塔默胡的影响
Madeline M Mumbleau1, Fabienne Chevance2, Kelly Hughes2
1Department of Chemistry and Henry Eyring Center for Cell and Genome Science, University of Utah, Salt Lake City, Utah 84112, United States.
ACS synthetic biology
|April 9, 2024
概括
研究人员评估了Pepper的aptamer在细菌中多颜色的光超越大肠杆菌. 一个新的RNA支架显著增强了体内光,使活细菌细胞的双色成像成为可能.
科学领域:
- 合成生物学 合成生物学
- 微生物学 微生物学
- 生物技术是生物技术.
背景情况:
- RNA合成生物学工具主要用于大肠杆菌.
- 多种细菌具有工业和临床重要性,需要更广泛的工具适用性.
研究的目的:
- 为了评估多颜色的原性吸收体胡在阳性和阴性细菌.
- 为不同的光信号识别合适的染料对.
- 为了研究RNA支架对体内光的影响.
主要方法:
- 在大肠杆菌,细菌细菌和沙门氏菌中胡的阿普塔默的评估. enterica serovar Typhimurium.
- 基于碳化合物 (HBC) -胡染料对的蓝色,绿色和红色光的识别.
- 测试各种RNA支架对它们对体内光效应的影响.
主要成果:
- 在测试的细菌物种中成功生成蓝色,绿色和红色光信号.
- 证明RNA支架在体内光显著影响.
- 发现了DF30-tRNA支架,产生比单独的胡更大的光度199倍.
- 能够同时在活细菌细胞中进行双色成像.
结论:
- 胡APTAMER是一种多功能工具,用于多种细菌物种的多色成像.
- RNA支架工程对于优化活体中aptamer性能至关重要.
- DF30-tRNA支架代表了细菌活细胞成像的重大进步.
相关概念视频
Types of RNA
Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
RNA Stability
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
Bacterial RNA Polymerase
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
Transfer RNA Synthesis
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Transcription Attenuation in Prokaryotes
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure. Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
Translational Regulation
Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...


