对转录和表观基因组数据的综合分析揭示了发育和家庭基因调节的独特模式
Irina Abnizova1,2, Carine Stapel1, Rene Te Boekhorst3
1Epigenetics Programme, Babraham Institute, Cambridge, UK.
BMC biology
|April 10, 2024
概括
在发育过程中,基因表达受到调节元件的控制. 这项研究揭示了独特的基因组和表观基因组特征,这些特征区分了远端与近端调节元件激活的基因.
科学领域:
- 发展生物学 发展生物学
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 基因组学就是基因组学.
背景情况:
- 转录调节是细胞在发育过程中出现细胞类型的关键.
- 调控元素受到转录因子和表观遗传标记的影响.
- 从基因组数据中提取监管原则仍然具有挑战性.
研究的目的:
- 研究基因组和表观基因组特征,在小鼠胃流动过程中区分差异和类似表达的基因.
- 了解近距离和远距离调节元素在谱系规范中的作用.
主要方法:
- 在小鼠胃化过程中分析基因表达,表观基因组概况,染色质可访问性和DNA甲基化.
- 在三个不同的细胞系中对基因组和表观基因组模式进行比较.
- 识别与近端和远端基因调节相关的特征.
主要成果:
- 不同表达的基因主要由远端元素调节,而类似表达的基因则由近端元素控制.
- 不同表达的基因在拓相关的域内被孤立;类似表达的基因在集群中.
- 基因转录与远端增强剂或近端促进剂的特定染色质可访问性模式相关.
结论:
- 将假定增强剂与发育基因的向促进剂联系起来.
- 推断出特定于血统的转录因子谱,识别先驱和合作子组.
- 为管理细胞类型规范的监管原则提供了洞察力.
相关概念视频
Epigenetic Regulation
31.1K
Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
31.1K
Regulation of Expression at Multiple Steps
902
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
902
Structure of a Gene
12.6K
A gene is the fundamental unit of heredity. Every individual has two copies of each gene, one inherited from each parent. Although most people contain the same genes, there is a small fraction that is slightly different amongst people. A gene with a small difference in its sequence of DNA bases forms different alleles, contributing to different phenotypes.
However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...
However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...
12.6K
Epistasis Analysis
5.0K
Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
5.0K
Combinatorial Gene Control
8.3K
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
8.3K
Regulation of Expression Occurs at Multiple Steps
22.7K
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
22.7K


