Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

53
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
53
Gauss's Law: Problem-Solving01:10

Gauss's Law: Problem-Solving

1.7K
Gauss's law helps determine electric fields even though the law is not directly about electric fields but electric flux. In situations with certain symmetries (spherical, cylindrical, or planar) in the charge distribution, the electric field can be deduced based on the knowledge of the electric flux. In these systems, we can find a Gaussian surface S over which the electric field has a constant magnitude. Furthermore, suppose the electric field is parallel (or antiparallel) to the area...
1.7K
Typical Model Studies01:30

Typical Model Studies

358
Fluid mechanics model studies often utilize scaled-down systems to predict fluid behavior in full-scale environments, such as river flows, dam spillways, and structures interacting with open surfaces. Maintaining Froude number similarity in river models is crucial, as it replicates surface flow features like wave patterns and velocities.
358
Parametric Survival Analysis: Weibull and Exponential Methods01:14

Parametric Survival Analysis: Weibull and Exponential Methods

424
Parametric survival analysis models survival data by assuming a specific probability distribution for the time until an event occurs. The Weibull and exponential distributions are two of the most commonly used methods in this context, due to their versatility and relatively straightforward application.
Weibull Distribution
The Weibull distribution is a flexible model used in parametric survival analysis. It can handle both increasing and decreasing hazard rates, depending on its shape parameter...
424
Mechanistic Models: Compartment Models in Individual and Population Analysis01:23

Mechanistic Models: Compartment Models in Individual and Population Analysis

39
Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least...
39
Estimation of the Physical Quantities01:05

Estimation of the Physical Quantities

4.2K
On many occasions, physicists, other scientists, and engineers need to make estimates of a particular quantity. These are sometimes referred to as guesstimates, order-of-magnitude approximations, back-of-the-envelope calculations, or Fermi calculations. The physicist Enrico Fermi was famous for his ability to estimate various kinds of data with surprising precision. Estimating does not mean guessing a number or a formula at random. Instead, estimation means using prior experience and sound...
4.2K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Dual RAF inhibition outperforms RAF-MEK combinations for suppressing ERK signaling in KRAS mutant cells.

NPJ systems biology and applications·2026
Same author

Literature-derived, context-aware gene regulatory networks improve biological predictions and mathematical modeling.

Bioinformatics (Oxford, England)·2026
Same author

Inference of Genetic Networks from Pseudo Time Series of Single-cell Gene Expression Data using Modified Random Forests.

Bulletin of mathematical biology·2026
Same author

Complex Visual Hallucinations in Post-stroke Epilepsy: A Case Report and Literature Review.

Internal medicine (Tokyo, Japan)·2026
Same author

Network structures and parameters in multiscale modeling in ErbB signaling networks.

Current opinion in cell biology·2025
Same author

The receptor tyrosine kinase ErbB2/HER2 governs CDK4 inhibitor sensitivity, timing, and irreversibility of the G1/S transition.

The Journal of biological chemistry·2025

相关实验视频

Updated: Jun 28, 2025

Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling SAHM
12:26

Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling SAHM

Published on: October 11, 2016

13.3K

扩展BioMASS,从外部知识中构建数学模型.

Kiwamu Arakane1, Hiroaki Imoto1, Fabian Ormersbach2

  • 1Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan.

Bioinformatics advances
|April 12, 2024
PubMed
概括
此摘要是机器生成的。

使用Text2Model的BioMASS框架自动化了自然语言的机械模型构建,克服了系统生物学中的手动策划瓶. 这加速了先前知识的整合,以实现可扩展的,数据驱动的数学建模.

更多相关视频

High-Throughput Metabolic Profiling for Model Refinements of Microalgae
11:07

High-Throughput Metabolic Profiling for Model Refinements of Microalgae

Published on: December 4, 2021

3.8K
Optimize Flue Gas Settings to Promote Microalgae Growth in Photobioreactors via Computer Simulations
14:33

Optimize Flue Gas Settings to Promote Microalgae Growth in Photobioreactors via Computer Simulations

Published on: October 1, 2013

14.4K

相关实验视频

Last Updated: Jun 28, 2025

Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling SAHM
12:26

Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling SAHM

Published on: October 11, 2016

13.3K
High-Throughput Metabolic Profiling for Model Refinements of Microalgae
11:07

High-Throughput Metabolic Profiling for Model Refinements of Microalgae

Published on: December 4, 2021

3.8K
Optimize Flue Gas Settings to Promote Microalgae Growth in Photobioreactors via Computer Simulations
14:33

Optimize Flue Gas Settings to Promote Microalgae Growth in Photobioreactors via Computer Simulations

Published on: October 1, 2013

14.4K

科学领域:

  • 系统生物学 系统生物学
  • 计算生物学 计算生物学
  • 数学建模的数学建模

背景情况:

  • 使用普通微分方程的机制建模在系统生物学中至关重要.
  • 模型构建的手动知识策划是一个重要的瓶.
  • 越来越多的知识积累需要可扩展的方法来生成可执行的模型.

研究的目的:

  • 在BioMASS框架内引入和展示Text2Model功能的能力.
  • 为了促进信号网络的大规模机械模型的构建.
  • 为了使数学模型开发能够采用更加数据驱动的方法.

主要方法:

  • 利用BioMASS框架,这是一个开源的Python工具,用于机械模型构建,模拟和分析.
  • 使用Text2Model功能来定义使用类似自然语言格式的模型.
  • 从路径数据库和用于模拟的大型语言模型中生成Text2Model文件.

主要成果:

  • 证明了Text2Model在将外部知识整合到数学模型中的有效性.
  • 使用Text2Model输入成功生成和模拟机械模型.
  • 展示了框架鼓励对先前知识的探索的能力.

结论:

  • 在BioMASS中的Text2Model有效地解决了手动知识策划的瓶.
  • 该框架支持可执行机械模型的可扩展构建.
  • 这种方法为系统生物学中完全数据驱动的数学建模铺平了道路.