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交互式生命之树 (iTOL) v6:对家族遗传树显示和注释工具的最新更新
Ivica Letunic1, Peer Bork2,3
1biobyte solutions GmbH, Bothestr 142, 69126 Heidelberg, Germany.
Nucleic acids research
|April 13, 2024
概括
交互式生命树 (iTOL) 版本6提供了更新的界面和用于管理和可视化家族遗传树的新功能. 此更新增强了树注释,元数据处理和标签定制,以更好地探索数据.
科学领域:
- 生物信息学是一种生物信息学.
- 计算生物学 计算生物学
- 进化生物学 进化生物学
背景情况:
- 遗传树对于理解进化关系至关重要.
- 管理和可视化大型,复杂的树木可能是一个挑战.
- 现有的工具可能缺乏高级注释和定制功能.
研究的目的:
- 推出iTOL版本6,这是交互式生命之树在线工具的显著更新版本.
- 为了增强管理,显示,注释和操纵家族遗传树的功能.
- 为用户提供一个更强大,更易于使用的树木可视化和分析平台.
主要方法:
- 开发一个现代化和重写的用户界面.
- 引入一个新的"颜色/标签范围"数据集类型.
- 扩大对现有数据集类型的注释选项.
- 实现了用于节点元数据处理和树标签定制的高级功能.
- 为基因组分类数据库 (GTDB) 和NCBI分类系统集成自动分类赋值.
主要成果:
- 一个完全重写的用户界面,拥有众多新功能.
- 增强的注释功能,包括彩色/标签范围和改进的元数据处理.
- 先进的树标签定制,多种字体风格和精确的控制.
- 支持GTDB分类学赋值,扩大分类学范围.
- 扩展用户帐户功能,用于项目管理和共享.
结论:
- iTOL版本6提供了一个显著升级的平台,用于家族遗传树的可视化和分析.
- 这些新功能增强了数据注释,元数据管理和用户定制.
- 该工具继续成为科学界的一个有价值的,免费可用的资源,支持数百万棵树.
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