在脊椎动物和昆虫中,祖先基因的组织特异表达的演变
Federica Mantica1,2, Luis P Iñiguez1, Yamile Marquez1
1Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.
Nature ecology & evolution
|April 15, 2024
概括
基因表达调节驱动组织多样性. 这项研究揭示了祖先基因如何在双边物种,特别是脊椎动物和昆虫中进化了组织特异性,影响了表型进化.
科学领域:
- 进化生物学 进化生物学
- 基因组学就是基因组学.
- 发展生物学 发展生物学
背景情况:
- 基因表达调节是跨组织和物种表型多样性的关键驱动力.
- 了解组织特异性基因表达的进化对于破译进化过程至关重要.
研究的目的:
- 研究20个双边物种的基因表达和组织特异性的进化,重点关注保存的祖先基因.
- 为了比较脊椎动物和昆虫之间的基因表达进化,使用对称的植物遗传学方法.
主要方法:
- 汇集了来自20个双边物种的8个组织的广泛的转录组数据集.
- 利用对称的遗传学框架对基因表达进化的比较分析.
- 对祖先基因的组织特异性收益和损失进行了系统的推断.
主要成果:
- 确定了泛双元组织特异性基因的保存核心,以及脊椎动物和昆虫中分开的不同组.
- 发现近一半的祖先基因已经被招募到特定组织的转录组中.
- 观察到基因重复之后的表达专业化,通常与全基因组重复联系在一起,推动了最近的组织特异性进化.
结论:
- 组织特异性基因表达在整个双边历史中得到了广泛的发展,为新型表型和细胞类型做出了贡献.
- 基因重复和表达的分歧,特别是在古老的全基因组重复之后,对脊椎动物的进化产生了深刻而长期的影响.
相关概念视频
The Evidence for Evolution
42.7K
Genetic variations accumulating within populations over generations give rise to biological evolution. Evolutionary changes can result in the formation of novel varieties and entire new species. These changes are responsible for the diverse forms of life inhabiting the planet. The evidence for evolution suggests that all living organisms descended from common ancestors.
42.7K
General Transcription Factors
5.3K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
5.3K
Cis-regulatory Sequences
9.9K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.9K
Gene Duplication and Divergence
6.1K
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
6.1K
Convergent Evolution
27.7K
Evolution shapes the features of organisms over time, ensuring that they are suited for the environments in which they live. Sometimes, selection pressure leads to the rise of similar but unrelated adaptations in organisms with no recent common ancestors, a process known as convergent evolution.
27.7K
Gene Evolution - Fast or Slow?
7.1K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
7.1K


