同时单细胞三维基因组和基因表达造型揭示了潜在的嗅觉受体选择的动态增强器连接性
Honggui Wu1,2, Jiankun Zhang1,2, Fanchong Jian1,2,3
1Biomedical Pioneering Innovation Center (BIOPIC), and School of Life Sciences, Peking University, Beijing, China.
Nature methods
|April 15, 2024
概括
我们开发了链接mRNA与染色体架构 (LiMCA) 以同时测量单细胞中的3D基因组结构和基因表达. 这种方法揭示了对嗅觉受体基因选择至关重要的动态增强剂-神经元相互作用.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 神经科学是一个神经科学.
背景情况:
- 同时测量单细胞中的3D基因组结构和基因表达,对于理解基因组功能至关重要.
- 现有的方法在灵敏度和输入要求方面面临挑战.
研究的目的:
- 介绍一种新的方法,即将mRNA与染色体架构 (LiMCA) 连接起来,用于3D基因组和转录组的联合分析.
- 描述染色质可访问性,3D基因组结构和在发育的嗅觉感官神经元中的基因表达.
主要方法:
- 开发和应用链接mRNA与染色体架构 (LiMCA) 进行敏感,低输入的关节概况.
- 集成的LiMCA与高分辨率的单细胞测试,通过METATAC通过转移酶可访问的染色体测序 (scATAC-seq).
主要成果:
- 成功描述了染色质可访问性,3D基因组结构和个体发育中的嗅觉感官神经元中的基因表达.
- 确定了新的嗅觉受体 (OR) 增强剂及其在早期分化过程中的动态可访问性.
- 揭示了ORs和强化剂之间的动态空间关系,控制了逐步的OR表达.
结论:
- LiMCA提供了一个敏感的工具,用于同时进行3D基因组和转录组分析.
- ORs和增强剂的动态3D基因组架构编排了"一个神经元-一个受体"选择过程.
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