相关实验视频
Updated: Jun 28, 2025

08:28
Single-molecule Manipulation of G-quadruplexes by Magnetic Tweezers
Published on: September 19, 2017
8.0K
通过拉动模拟探测平行四边形G-四重复的机械稳定性和展开路径
Zhengyue Zhang1,2,3, Vojtěch Mlýnský1, Miroslav Krepl1
1Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, Brno 61200, Czech Republic.
Journal of chemical information and modeling
|April 17, 2024
概括
关四重复 (GQ) 展开是异构的,垂直拉力显著影响机械稳定性,并启动底部解锁. 这些发现提升了对GQ折叠景观的理解.
科学领域:
- 生物物理学的生物物理.
- 计算生物学 计算生物学
- 结构生物学 结构生物学
背景情况:
- 关氨酸四重复体 (GQs) 是非正规的核酸结构,具有关键的生物作用.
- GQ折叠机制和机械性能尚未完全理解.
- 拉动实验为GQ折叠景观提供了洞察力.
研究的目的:
- 通过计算探索四度平行GQs的展开路径和机械稳定性.
- 调查拉力导向在GQ结构转型中的作用.
- 识别关键的展开事件和中间形状.
主要方法:
- 导向分子动力学 (SMD) 模拟.
- 标准分子动力学 (MD) 模拟.
- 分析结构参数和力组成部分.
主要成果:
- 确定了GQ形状变化和展开的异型机械性质.
- 证明拉力垂直组成部分显著破坏了GQ结构和稳定性.
- 观察到底部解作为主要的初始展开事件,通常从3'-end开始.
结论:
- 垂直拉力的大小取决于位和G四重奏的数量.
- 部分螺旋形状是GQ (解) 折叠过程中的短暂中间体.
- 结果为GQ机械行为和折叠动态提供了关键的见解.
相关概念视频
DNA Helicases
21.3K
DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
21.3K
Single-Strand DNA Binding Proteins
14.1K
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
14.1K
Protein Folding
118.0K
Overview
118.0K
Microtubule Instability
5.1K
Microtubules are hollow cylindrical filaments having a diameter of approximately 25 nm and a length that varies from 200 nm to 25 μm. GTP-bound tubulin subunits form αβ-heterodimers for microtubule assembly. These core building blocks interact longitudinally, polymerizing into protofilaments. The protofilaments then interact with one another through lateral bonding forces to form stable cylindrical microtubules. These cylindrical filaments are dynamic as they undergo repeated...
5.1K

