通过稳定状态在联网动态系统中有效的参数推断:一种替代客观函数方法,集成平均场和非线性最小平方
Yanna Ding1, Jianxi Gao1, Malik Magdon-Ismail1
1Department of Computer Science, Rensselaer Polytechnic Institute, Troy, New York 12180, USA.
Physical review. E
|April 18, 2024
概括
本研究引入了一种新方法,用于估计网络动态系统中的参数,仅使用噪音稳定状态数据. 这种方法显著降低了计算成本,并提高了未来平衡的预测准确性.
科学领域:
- 网络化动态系统 网络化动态系统
- 计算生物学是一种计算生物学.
- 系统生态学 系统生态学
背景情况:
- 参数推断对于预测网络系统中的节点动态至关重要.
- 传统方法通常需要时间序列数据,但这些数据并不总是可用.
- 噪音稳定状态数据对参数估计构成了挑战.
研究的目的:
- 开发一种有效的方法,从噪音稳定状态数据中推断动态参数.
- 为了减少与传统参数估计技术相关的计算复杂性.
- 提高网络系统中预测未来平衡的准确性.
主要方法:
- 引入了使用脱方程计算稳定状态的替代目标函数.
- 优化了替代目标函数以近似地面真实稳定状态.
- 通过避免对合普通微分方程的重复模拟,减少了计算需求.
主要成果:
- 与杂的观测相比,取得了更准确的稳定状态近似值.
- 在网络拓变化之后成功预测了未来的平衡.
- 在生态,基因调节和流行病网络模型中证明了有效性.
结论:
- 拟议的方法提供了一种高效和有效的方法,用于从稳定状态数据中进行参数估计.
- 这种技术有可能提高各种网络动态系统中的预测.
- 即使有有限或杂的观测数据,也能够进行强大的参数推断.
相关概念视频
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving
53
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
53
Linear Approximation in Time Domain
81
Nonlinear systems often require sophisticated approaches for accurate modeling and analysis, with state-space representation being particularly effective. This method is especially useful for systems where variables and parameters vary with time or operating conditions, such as in a simple pendulum or a translational mechanical system with nonlinear springs.
For a simple pendulum with a mass evenly distributed along its length and the center of mass located at half the pendulum's length,...
For a simple pendulum with a mass evenly distributed along its length and the center of mass located at half the pendulum's length,...
81
Linear Approximation in Frequency Domain
89
Linear systems are characterized by two main properties: superposition and homogeneity. Superposition allows the response to multiple inputs to be the sum of the responses to each individual input. Homogeneity ensures that scaling an input by a scalar results in the response being scaled by the same scalar.
In contrast, nonlinear systems do not inherently possess these properties. However, for small deviations around an operating point, a nonlinear system can often be approximated as linear....
In contrast, nonlinear systems do not inherently possess these properties. However, for small deviations around an operating point, a nonlinear system can often be approximated as linear....
89
One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation
487
This lesson introduces two critical methods in pharmacokinetics, the Wagner-Nelson and Loo-Riegelman methods, used for estimating the absorption rate constant (ka) for drugs administered via non-intravenous routes. The Wagner-Nelson method relates ka to the plasma concentration derived from the slope of a semilog percent unabsorbed time plot. However, it is limited to drugs with one-compartment kinetics and can be impacted by factors like gastrointestinal motility or enzymatic degradation.
On...
On...
487
Model Approaches for Pharmacokinetic Data: Distributed Parameter Models
69
Pharmacokinetic models are mathematical constructs that represent and predict the time course of drug concentrations in the body, providing meaningful pharmacokinetic parameters. These models are categorized into compartment, physiological, and distributed parameter models.
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
69
Mechanistic Models: Compartment Models in Individual and Population Analysis
39
Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least...
39


