截断的蛋白质单体形式产生蛋白质定位和功能在酵母酵母的多样性
Andrea L Higdon1, Nathan H Won2, Gloria A Brar1
1Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA; Center for Computational Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
一个新的算法识别了酵母中388个N-终端截断的蛋白质,揭示了新的蛋白质异型. 这些截断的蛋白质表现出不同的功能和定位,扩大了我们对蛋白质组的理解.
科学领域:
- 蛋白质组学是指蛋白质组学.
- 酵母分子生物学酵母分子生物学
- 基因表达调节 基因表达调节
背景情况:
- 全基因组的核糖体占用概况有助于识别翻译的mRNA区域.
- 检测重叠注释区域的编码区域仍然是一个挑战.
研究的目的:
- 开发一种灵敏而强大的算法,用于检测翻译区域,特别是N端截断蛋白.
- 为了实验验证和描述这些新型蛋白质异型在芽酵母中的特征.
主要方法:
- 利用全基因组的核糖体占用率测量.
- 开发了一种新的计算算法,用于对翻译区域的高可靠性检测.
- 对已识别的截断蛋白进行了广泛的实验验证.
主要成果:
- 在芽酵母中确定了388个N-终端截断蛋白,比以前的知识增加了30倍以上.
- 分类截断蛋白质分为两组:缺少大部分 (通常来自截断的转录) 和缺少小区域.
- 证明了Yap5和Pus1的特定条件调节和不同的功能.
- 观察到一些截断的单体的细胞下局部变化,这表明双局部化策略.
结论:
- 开发的算法显著扩大了已知的翻译蛋白质谱.
- 截断的蛋白质异型可以从截断的转录或替代拼接中产生,导致功能和本地化分歧.
- 这些发现凸显了酵母蛋白质组的复杂性和替代翻译产品的重要性.
更多相关视频
09:22Budding Yeast Protein Extraction and Purification for the Study of Function, Interactions, and Post-translational Modifications
Published on: October 30, 2013
14:44Isolation of mRNAs Associated with Yeast Mitochondria to Study Mechanisms of Localized Translation
Published on: March 14, 2014
相关概念视频
Protein Complexes with Interchangeable Parts
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
RNA Splicing
Proteins: From Genes to Degradation
Transcription is the synthesis of RNA...
Overview of Protein Sorting and Transport
Protein sorting can be of two types: signal-based sorting and vesicle-based trafficking. In signal-based sorting, specific amino acid sequences called sorting signals target proteins to the proper location inside the cell either via gated transport or by protein translocation. In gated transport, folded...
Overview of Secretory Vesicles
Various proteins regulate the aggregation of molecules inside the secretory vesicles. Chromogranins...
Post-translational Translocation of Proteins to the RER
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
